Variant report

Variant	rs6812187
Chromosome Location	chr4:21619699-21619700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10021380	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1021862	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10516394	1.00[CHB][hapmap]
rs10938847	0.82[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10938851	0.96[CEU][hapmap];0.82[YRI][hapmap]
rs1105377	0.89[CHB][hapmap]
rs11728537	0.92[CEU][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs11935160	0.89[JPT][hapmap]
rs13110918	0.89[CHB][hapmap]
rs1394137	0.91[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap]
rs1394139	0.96[CEU][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs1503993	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1503994	0.88[YRI][hapmap]
rs17559457	0.89[CHB][hapmap]
rs1814167	0.92[CEU][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs1827595	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs2323068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2874950	0.93[ASN][1000 genomes]
rs358836	0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3913663	0.96[CEU][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs4572864	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4572865	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6448061	0.92[CEU][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6448063	0.89[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap]
rs6828989	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657068	0.89[CHB][hapmap]
rs7661478	0.87[CEU][hapmap];0.82[YRI][hapmap]
rs7664902	0.96[CEU][hapmap];0.82[YRI][hapmap]
rs7665351	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7675686	0.84[CHD][hapmap]
rs7684272	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs9291428	1.00[CHB][hapmap];0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829880	chr4:21492426-21693816	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1008716	chr4:21580423-21633636	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1003426	chr4:21580423-21640350	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461289	chr4:21588298-21639516	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv593809	chr4:21588298-21639516	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21609400-21628000	Weak transcription	Ovary	ovary

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