Variant report

Variant	rs35982081
Chromosome Location	chr15:52160155-52160156
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52154585..52156625-chr15:52159683..52161779,2	MCF-7	breast:
2	chr15:52159741..52163398-chr15:52164668..52167554,5	MCF-7	breast:
3	chr15:52158309..52160218-chr15:52163470..52165265,2	MCF-7	breast:
4	chr15:52121292..52123074-chr15:52158568..52161271,2	MCF-7	breast:
5	chr15:52120688..52125353-chr15:52156993..52161402,10	MCF-7	breast:
6	chr15:52152690..52156184-chr15:52157432..52160441,3	K562	blood:
7	chr15:52159251..52161933-chr15:52180399..52182234,2	MCF-7	breast:
8	chr15:52154684..52157161-chr15:52157942..52160441,2	K562	blood:
9	chr15:52158294..52160875-chr15:52263682..52265379,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction
ENSG00000259632	Chromatin interaction
ENSG00000166477	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55712231	1.00[AMR][1000 genomes]
rs58041881	1.00[AMR][1000 genomes]
rs59580277	1.00[AMR][1000 genomes]
rs59946322	1.00[AMR][1000 genomes]
rs74015715	1.00[AMR][1000 genomes]
rs74015720	1.00[AMR][1000 genomes]
rs74015723	1.00[AMR][1000 genomes]
rs74015725	1.00[AMR][1000 genomes]
rs74015728	1.00[AMR][1000 genomes]
rs74015729	1.00[AMR][1000 genomes]
rs74015758	1.00[AMR][1000 genomes]
rs74015760	1.00[AMR][1000 genomes]
rs74015762	1.00[AMR][1000 genomes]
rs74015764	1.00[AMR][1000 genomes]
rs74015767	1.00[AMR][1000 genomes]
rs74015768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52141600-52166800	Weak transcription	Stomach Mucosa	stomach
2	chr15:52141800-52176200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:52145800-52176600	Weak transcription	Psoas Muscle	Psoas
4	chr15:52148200-52176200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:52149000-52161000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:52149400-52171000	Weak transcription	Brain Angular Gyrus	brain
7	chr15:52149800-52160600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:52149800-52168000	Weak transcription	Right Ventricle	heart
9	chr15:52150600-52160800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:52152400-52170000	Weak transcription	Pancreas	Pancrea
11	chr15:52152400-52170800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:52153200-52161200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:52153200-52161600	Genic enhancers	NHEK	skin
14	chr15:52153400-52161600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:52153800-52178000	Weak transcription	Brain Germinal Matrix	brain
16	chr15:52154000-52161600	Genic enhancers	HMEC	breast
17	chr15:52154400-52162000	Weak transcription	Small Intestine	intestine
18	chr15:52154400-52165800	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:52154400-52170200	Weak transcription	Fetal Brain Male	brain
20	chr15:52155000-52160400	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr15:52155000-52160800	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:52155000-52162600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:52155000-52162800	Strong transcription	Fetal Stomach	stomach
24	chr15:52155000-52164000	Strong transcription	Primary B cells from cord blood	blood
25	chr15:52155000-52165400	Strong transcription	Dnd41	blood
26	chr15:52155000-52167600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:52155000-52167800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr15:52155000-52169800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr15:52155000-52170800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:52155000-52173600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr15:52155200-52160400	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr15:52155200-52167800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr15:52155200-52169600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:52155200-52170600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:52155400-52163800	Strong transcription	Primary T cells from cord blood	blood
36	chr15:52155400-52165400	Strong transcription	Thymus	Thymus
37	chr15:52155600-52164800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr15:52155600-52166400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr15:52155600-52192000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:52156000-52211000	Weak transcription	Brain Substantia Nigra	brain
41	chr15:52156200-52161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:52156400-52170600	Weak transcription	Brain Anterior Caudate	brain
43	chr15:52156800-52162200	Weak transcription	Aorta	Aorta
44	chr15:52156800-52162600	Weak transcription	Ovary	ovary
45	chr15:52156800-52170000	Weak transcription	Spleen	Spleen
46	chr15:52157000-52161000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:52157000-52161200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:52157000-52162600	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:52157000-52166800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:52157000-52168600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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