Variant report

Variant	rs74015725
Chromosome Location	chr15:52028240-52028241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52028180..52031136-chr15:52040562..52045385,6	MCF-7	breast:
2	chr15:52027363..52032665-chr15:52041435..52046045,23	MCF-7	breast:
3	chr15:51950953..51953753-chr15:52026333..52028408,2	MCF-7	breast:
4	chr15:52026672..52029372-chr15:52056834..52058990,2	MCF-7	breast:
5	chr15:52026416..52029376-chr15:52033345..52036135,2	K562	blood:
6	chr15:51911576..51916583-chr15:52027382..52031699,5	MCF-7	breast:
7	chr15:51941822..51942724-chr15:52027267..52028353,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259377	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000104093	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10450960	1.00[AMR][1000 genomes]
rs35982081	1.00[AMR][1000 genomes]
rs55712231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58041881	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59580277	1.00[AMR][1000 genomes]
rs59946322	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015723	1.00[AMR][1000 genomes]
rs74015728	1.00[AMR][1000 genomes]
rs74015729	1.00[AMR][1000 genomes]
rs74015758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015760	1.00[AMR][1000 genomes]
rs74015762	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015764	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015767	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	esv3322785	chr15:52028185-52031033	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52013600-52028400	Weak transcription	Fetal Brain Female	brain
2	chr15:52013600-52028800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:52020000-52028800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:52020200-52029000	Weak transcription	NH-A	brain
5	chr15:52024200-52028400	Flanking Active TSS	GM12878-XiMat	blood
6	chr15:52024400-52028400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:52024400-52028400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:52024400-52028400	Enhancers	Fetal Thymus	thymus
9	chr15:52024400-52028400	Enhancers	Thymus	Thymus
10	chr15:52024400-52028800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:52024400-52028800	Weak transcription	Right Ventricle	heart
12	chr15:52024600-52028400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:52024600-52028400	Weak transcription	Aorta	Aorta
14	chr15:52024600-52028400	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:52024600-52028400	Weak transcription	Gastric	stomach
16	chr15:52024600-52028400	Weak transcription	NHEK	skin
17	chr15:52024600-52028600	Weak transcription	Fetal Stomach	stomach
18	chr15:52024600-52028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:52024600-52028800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:52024600-52028800	Weak transcription	Osteobl	bone
21	chr15:52024600-52029000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:52024800-52028400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:52024800-52028400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:52024800-52028400	Weak transcription	Fetal Intestine Large	intestine
25	chr15:52024800-52028400	Weak transcription	Placenta	Placenta
26	chr15:52024800-52028400	Weak transcription	Stomach Mucosa	stomach
27	chr15:52025000-52028400	Weak transcription	Colonic Mucosa	Colon
28	chr15:52025000-52028400	Weak transcription	Pancreas	Pancrea
29	chr15:52025000-52028400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:52025000-52028400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:52025000-52028600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:52025000-52028800	Weak transcription	Left Ventricle	heart
33	chr15:52025200-52028400	Weak transcription	Right Atrium	heart
34	chr15:52025200-52028800	Weak transcription	HSMMtube	muscle
35	chr15:52025400-52029000	Weak transcription	Esophagus	oesophagus
36	chr15:52026400-52029400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:52026600-52028600	Enhancers	K562	blood
38	chr15:52026800-52028400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:52026800-52028800	Weak transcription	Psoas Muscle	Psoas
40	chr15:52026800-52029000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr15:52027000-52028400	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr15:52027000-52030400	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr15:52027200-52028400	Weak transcription	Small Intestine	intestine
44	chr15:52027200-52029200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:52027200-52029400	Flanking Active TSS	Dnd41	blood
46	chr15:52027400-52028400	Enhancers	Liver	Liver
47	chr15:52027400-52028400	Enhancers	Fetal Brain Male	brain
48	chr15:52027400-52029200	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr15:52027400-52029200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr15:52027400-52029400	Flanking Active TSS	Primary B cells from cord blood	blood

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