Variant report

Variant	rs74015728
Chromosome Location	chr15:52041199-52041200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10450960	1.00[AMR][1000 genomes]
rs35982081	1.00[AMR][1000 genomes]
rs55712231	1.00[AMR][1000 genomes]
rs58041881	1.00[AMR][1000 genomes]
rs59580277	1.00[AMR][1000 genomes]
rs59946322	1.00[AMR][1000 genomes]
rs74015715	1.00[AMR][1000 genomes]
rs74015720	1.00[AMR][1000 genomes]
rs74015723	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015725	1.00[AMR][1000 genomes]
rs74015729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015758	1.00[AMR][1000 genomes]
rs74015760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015762	1.00[AMR][1000 genomes]
rs74015764	1.00[AMR][1000 genomes]
rs74015767	1.00[AMR][1000 genomes]
rs74015768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830011	chr15:52027777-52048710	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
2	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52030600-52043200	Weak transcription	Gastric	stomach
2	chr15:52031200-52043000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52040800-52041200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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