Variant report

Variant	rs35982476
Chromosome Location	chr15:52584418-52584419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52584377..52586164-chr15:52849893..52851751,2	MCF-7	breast:
2	chr15:52581350..52585067-chr15:52859210..52861594,5	MCF-7	breast:
3	chr15:52582266..52584692-chr15:52609132..52611411,2	MCF-7	breast:
4	chr15:52536664..52559220-chr15:52576974..52590204,72	MCF-7	breast:
5	chr15:52541572..52560373-chr15:52569752..52591000,64	MCF-7	breast:
6	chr15:52583678..52585995-chr15:52615862..52618102,2	MCF-7	breast:
7	chr15:52584393..52589074-chr15:52819513..52822265,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197535	Chromatin interaction
ENSG00000128989	Chromatin interaction
ENSG00000128833	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11854890	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12907067	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12907952	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4238390	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442751	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776034	0.84[AMR][1000 genomes]
rs55845575	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56071450	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57506065	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62015972	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52555000-52585000	Weak transcription	Left Ventricle	heart
2	chr15:52556000-52587000	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:52565800-52587000	Weak transcription	Right Atrium	heart
4	chr15:52571200-52585800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:52571200-52587000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:52574600-52587000	Weak transcription	Brain Anterior Caudate	brain
7	chr15:52575000-52585000	Weak transcription	Fetal Stomach	stomach
8	chr15:52580400-52587000	Weak transcription	Right Ventricle	heart
9	chr15:52581000-52587200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:52581200-52587000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:52581400-52585800	Weak transcription	Fetal Intestine Small	intestine
12	chr15:52581600-52585000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:52582200-52585000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:52582200-52585000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:52582200-52586800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:52582400-52584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:52582400-52584800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:52582400-52584800	Weak transcription	Gastric	stomach
19	chr15:52582400-52585000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:52582400-52585000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:52582400-52585400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:52582400-52585400	Weak transcription	Colonic Mucosa	Colon
23	chr15:52582400-52585400	Weak transcription	Lung	lung
24	chr15:52582400-52586400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr15:52582400-52586400	Weak transcription	Hela-S3	cervix
26	chr15:52582400-52586600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:52582400-52586800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:52582400-52586800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:52582400-52587000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:52582400-52587200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:52582600-52584600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr15:52583200-52585400	Genic enhancers	Pancreas	Pancrea
33	chr15:52583400-52586000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:52583600-52584800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:52583600-52585000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:52583600-52585000	Weak transcription	Esophagus	oesophagus
37	chr15:52583600-52587000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:52583800-52584800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr15:52583800-52584800	Weak transcription	Stomach Mucosa	stomach
40	chr15:52583800-52584800	Weak transcription	A549	lung
41	chr15:52583800-52585000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr15:52583800-52585000	Enhancers	GM12878-XiMat	blood
43	chr15:52583800-52585400	Weak transcription	Spleen	Spleen
44	chr15:52583800-52587000	Weak transcription	Fetal Kidney	kidney
45	chr15:52584200-52585000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:52584200-52585200	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr15:52584400-52585200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:52584400-52585200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:52584400-52585400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:52584400-52585400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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