Variant report

Variant	rs56071450
Chromosome Location	chr15:52591352-52591353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11854890	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12907067	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12907952	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35982476	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4238390	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4442751	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55845575	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57506065	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62015972	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52588000-52598200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:52588200-52595200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52588200-52595600	Weak transcription	Ovary	ovary
4	chr15:52588200-52602200	Weak transcription	HSMM	muscle
5	chr15:52588400-52598400	Weak transcription	HMEC	breast
6	chr15:52588400-52602800	Weak transcription	Aorta	Aorta
7	chr15:52588800-52593000	Weak transcription	HepG2	liver
8	chr15:52589000-52598400	Weak transcription	A549	lung
9	chr15:52591000-52601000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:52591200-52591400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr15:52591200-52591400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:52591200-52591400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:52591200-52595800	Weak transcription	NHDF-Ad	bronchial
14	chr15:52591200-52598200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:52591200-52602400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links