Variant report

Variant	rs57506065
Chromosome Location	chr15:52590615-52590616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11854890	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12907067	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12907952	0.91[EUR][1000 genomes]
rs35982476	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4238390	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4442751	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55845575	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56071450	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62015972	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52588000-52598200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:52588200-52595200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52588200-52595600	Weak transcription	Ovary	ovary
4	chr15:52588200-52602200	Weak transcription	HSMM	muscle
5	chr15:52588400-52598400	Weak transcription	HMEC	breast
6	chr15:52588400-52602800	Weak transcription	Aorta	Aorta
7	chr15:52588800-52593000	Weak transcription	HepG2	liver
8	chr15:52589000-52598400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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