Variant report

Variant	rs35986835
Chromosome Location	chr13:39417065-39417066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs11618742	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12864816	1.00[ASN][1000 genomes]
rs12869426	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12869876	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12869917	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12875224	1.00[ASN][1000 genomes]
rs1333506	1.00[ASN][1000 genomes]
rs1333508	1.00[ASN][1000 genomes]
rs1945496	1.00[ASN][1000 genomes]
rs34127262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35252750	1.00[ASN][1000 genomes]
rs35429023	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35459396	1.00[ASN][1000 genomes]
rs35657252	1.00[ASN][1000 genomes]
rs35944548	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36088006	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4287442	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4334155	1.00[ASN][1000 genomes]
rs4369521	1.00[ASN][1000 genomes]
rs4397983	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4426230	1.00[ASN][1000 genomes]
rs4426231	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4533148	1.00[ASN][1000 genomes]
rs4643179	1.00[ASN][1000 genomes]
rs4943606	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943607	1.00[ASN][1000 genomes]
rs4943608	1.00[ASN][1000 genomes]
rs4943609	1.00[ASN][1000 genomes]
rs4943610	1.00[ASN][1000 genomes]
rs4943611	1.00[ASN][1000 genomes]
rs4943612	1.00[ASN][1000 genomes]
rs4943615	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61945515	1.00[ASN][1000 genomes]
rs61945516	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61947983	1.00[ASN][1000 genomes]
rs61948017	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61948018	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66889481	1.00[ASN][1000 genomes]
rs71198492	1.00[ASN][1000 genomes]
rs71423186	1.00[ASN][1000 genomes]
rs71423187	1.00[ASN][1000 genomes]
rs71439788	1.00[ASN][1000 genomes]
rs71439789	1.00[ASN][1000 genomes]
rs7328953	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7331927	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7982313	1.00[ASN][1000 genomes]
rs9532285	1.00[ASN][1000 genomes]
rs9532287	1.00[ASN][1000 genomes]
rs9532288	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9532294	1.00[ASN][1000 genomes]
rs9532297	1.00[ASN][1000 genomes]
rs9532298	1.00[ASN][1000 genomes]
rs9532310	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548466	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548467	1.00[ASN][1000 genomes]
rs9548468	1.00[ASN][1000 genomes]
rs9548471	1.00[ASN][1000 genomes]
rs9548473	1.00[ASN][1000 genomes]
rs9548474	1.00[ASN][1000 genomes]
rs9548475	1.00[ASN][1000 genomes]
rs9548476	1.00[ASN][1000 genomes]
rs9548478	1.00[ASN][1000 genomes]
rs9548479	1.00[ASN][1000 genomes]
rs9548480	1.00[ASN][1000 genomes]
rs9548488	1.00[ASN][1000 genomes]
rs9548489	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548490	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548492	1.00[ASN][1000 genomes]
rs9548493	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548494	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548495	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548496	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548497	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548498	1.00[ASN][1000 genomes]
rs9548499	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548500	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548501	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548502	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548503	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548504	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548505	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548507	1.00[ASN][1000 genomes]
rs9548515	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548521	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548523	1.00[ASN][1000 genomes]
rs9548524	1.00[ASN][1000 genomes]
rs9548525	1.00[ASN][1000 genomes]
rs9548531	1.00[ASN][1000 genomes]
rs9548532	1.00[ASN][1000 genomes]
rs9548535	1.00[ASN][1000 genomes]
rs9548552	1.00[ASN][1000 genomes]
rs9548554	1.00[ASN][1000 genomes]
rs9548555	1.00[ASN][1000 genomes]
rs9548556	1.00[ASN][1000 genomes]
rs9548557	1.00[ASN][1000 genomes]
rs9548560	1.00[ASN][1000 genomes]
rs9548562	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548563	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548569	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548573	1.00[ASN][1000 genomes]
rs9548576	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39394600-39423000	Weak transcription	Fetal Kidney	kidney
3	chr13:39414000-39420800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:39414600-39422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:39414600-39425400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:39415800-39418600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:39416800-39417400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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