Variant report

Variant	rs9548479
Chromosome Location	chr13:39413984-39413985
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs11618742	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12164864	0.83[AMR][1000 genomes]
rs12864816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12869426	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12869876	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12869917	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12875224	1.00[ASN][1000 genomes]
rs1333506	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1333507	0.86[AMR][1000 genomes]
rs1333508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1333509	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1945496	1.00[ASN][1000 genomes]
rs34127262	1.00[ASN][1000 genomes]
rs35252750	1.00[ASN][1000 genomes]
rs35429023	1.00[ASN][1000 genomes]
rs35459396	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35657252	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35944548	1.00[ASN][1000 genomes]
rs35986835	1.00[ASN][1000 genomes]
rs36088006	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4287442	1.00[ASN][1000 genomes]
rs4334155	1.00[ASN][1000 genomes]
rs4369521	1.00[ASN][1000 genomes]
rs4397983	1.00[ASN][1000 genomes]
rs4426230	1.00[ASN][1000 genomes]
rs4426231	1.00[ASN][1000 genomes]
rs4505188	0.84[AMR][1000 genomes]
rs4533148	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4643179	1.00[ASN][1000 genomes]
rs4943606	1.00[ASN][1000 genomes]
rs4943607	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943608	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943610	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943611	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943612	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943615	1.00[ASN][1000 genomes]
rs61945515	1.00[ASN][1000 genomes]
rs61945516	1.00[ASN][1000 genomes]
rs61947983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61948017	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61948018	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6563638	0.85[AMR][1000 genomes]
rs6563639	0.82[AMR][1000 genomes]
rs6563641	0.83[AMR][1000 genomes]
rs66889481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71198492	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71423186	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71423187	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423188	0.87[AMR][1000 genomes]
rs71439788	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71439789	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322839	0.81[AMR][1000 genomes]
rs7323599	0.81[AMR][1000 genomes]
rs7328953	1.00[ASN][1000 genomes]
rs7331927	1.00[ASN][1000 genomes]
rs7337847	0.81[AMR][1000 genomes]
rs7982313	1.00[ASN][1000 genomes]
rs9315615	0.86[AMR][1000 genomes]
rs9532285	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9532287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532288	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9532294	1.00[ASN][1000 genomes]
rs9532297	1.00[ASN][1000 genomes]
rs9532298	1.00[ASN][1000 genomes]
rs9532310	1.00[ASN][1000 genomes]
rs9548466	1.00[ASN][1000 genomes]
rs9548467	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548468	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548469	0.89[AMR][1000 genomes]
rs9548471	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548472	0.86[AMR][1000 genomes]
rs9548473	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548474	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548475	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548476	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548478	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548480	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548483	0.87[AMR][1000 genomes]
rs9548488	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548489	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548490	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548492	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548493	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548494	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548495	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548496	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548497	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548498	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548499	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548500	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548501	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548502	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548503	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548504	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548505	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9548507	1.00[ASN][1000 genomes]
rs9548510	0.81[AMR][1000 genomes]
rs9548511	0.81[AMR][1000 genomes]
rs9548512	0.81[AMR][1000 genomes]
rs9548515	1.00[ASN][1000 genomes]
rs9548521	1.00[ASN][1000 genomes]
rs9548523	1.00[ASN][1000 genomes]
rs9548524	1.00[ASN][1000 genomes]
rs9548525	1.00[ASN][1000 genomes]
rs9548531	1.00[ASN][1000 genomes]
rs9548532	1.00[ASN][1000 genomes]
rs9548535	1.00[ASN][1000 genomes]
rs9548552	1.00[ASN][1000 genomes]
rs9548554	1.00[ASN][1000 genomes]
rs9548555	1.00[ASN][1000 genomes]
rs9548556	1.00[ASN][1000 genomes]
rs9548557	1.00[ASN][1000 genomes]
rs9548560	1.00[ASN][1000 genomes]
rs9548562	1.00[ASN][1000 genomes]
rs9548563	1.00[ASN][1000 genomes]
rs9548569	1.00[ASN][1000 genomes]
rs9548573	1.00[ASN][1000 genomes]
rs9548576	1.00[ASN][1000 genomes]
rs9603441	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39394600-39423000	Weak transcription	Fetal Kidney	kidney
3	chr13:39413400-39414000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:39413400-39414600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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