Variant report

Variant	rs4505188
Chromosome Location	chr13:39403042-39403043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr13:39403014-39403214	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
FREM2-AS1	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12164864	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12864816	0.84[AMR][1000 genomes]
rs1333506	0.84[AMR][1000 genomes]
rs1333507	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1333508	0.84[AMR][1000 genomes]
rs1333509	0.84[AMR][1000 genomes]
rs4943607	0.80[AMR][1000 genomes]
rs4943608	0.84[AMR][1000 genomes]
rs4943609	0.84[AMR][1000 genomes]
rs4943610	0.84[AMR][1000 genomes]
rs4943611	0.84[AMR][1000 genomes]
rs4943612	0.84[AMR][1000 genomes]
rs61947983	0.84[AMR][1000 genomes]
rs6563638	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6563639	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6563641	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66889481	0.84[AMR][1000 genomes]
rs71198493	0.86[EUR][1000 genomes]
rs71423188	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71439788	0.84[AMR][1000 genomes]
rs71439789	0.84[AMR][1000 genomes]
rs7319670	0.85[MKK][hapmap]
rs7322839	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7323599	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7337847	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9315615	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9532287	0.84[AMR][1000 genomes]
rs9548469	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548471	0.84[AMR][1000 genomes]
rs9548472	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9548473	0.86[AMR][1000 genomes]
rs9548474	0.84[AMR][1000 genomes]
rs9548476	0.82[AMR][1000 genomes]
rs9548478	0.83[AMR][1000 genomes]
rs9548479	0.84[AMR][1000 genomes]
rs9548480	0.84[AMR][1000 genomes]
rs9548483	0.83[AMR][1000 genomes]
rs9548488	0.84[AMR][1000 genomes]
rs9548510	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9548511	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9548512	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9603441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389200-39404800	Weak transcription	Gastric	stomach
2	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39394600-39423000	Weak transcription	Fetal Kidney	kidney
4	chr13:39400800-39404400	Weak transcription	Pancreas	Pancrea
5	chr13:39400800-39413400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:39402600-39403400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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