Variant report

Variant	rs6563641
Chromosome Location	chr13:39416172-39416173
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs12164864	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12864816	0.83[AMR][1000 genomes]
rs1333506	0.83[AMR][1000 genomes]
rs1333507	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1333508	0.83[AMR][1000 genomes]
rs1333509	0.83[AMR][1000 genomes]
rs1894106	0.86[ASN][1000 genomes]
rs1894107	0.86[ASN][1000 genomes]
rs1945509	0.86[ASN][1000 genomes]
rs1945510	0.86[ASN][1000 genomes]
rs4280113	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303350	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505188	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4536338	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943607	0.85[AMR][1000 genomes]
rs4943608	0.83[AMR][1000 genomes]
rs4943609	0.83[AMR][1000 genomes]
rs4943610	0.83[AMR][1000 genomes]
rs4943611	0.83[AMR][1000 genomes]
rs4943612	0.83[AMR][1000 genomes]
rs4943614	0.86[ASN][1000 genomes]
rs61947983	0.83[AMR][1000 genomes]
rs6563638	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563639	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563640	0.98[ASN][1000 genomes]
rs66889481	0.83[AMR][1000 genomes]
rs71198493	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71423188	0.82[AMR][1000 genomes]
rs71439788	0.83[AMR][1000 genomes]
rs71439789	0.83[AMR][1000 genomes]
rs7320992	0.98[ASN][1000 genomes]
rs7322839	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7323599	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7332206	0.86[ASN][1000 genomes]
rs7336199	0.96[ASN][1000 genomes]
rs7337847	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73466004	0.98[ASN][1000 genomes]
rs9315615	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9532287	0.83[AMR][1000 genomes]
rs9532289	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9532290	0.80[EUR][1000 genomes]
rs9532291	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9532295	0.86[ASN][1000 genomes]
rs9548469	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9548471	0.83[AMR][1000 genomes]
rs9548472	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9548473	0.85[AMR][1000 genomes]
rs9548474	0.83[AMR][1000 genomes]
rs9548476	0.81[AMR][1000 genomes]
rs9548478	0.82[AMR][1000 genomes]
rs9548479	0.83[AMR][1000 genomes]
rs9548480	0.83[AMR][1000 genomes]
rs9548483	0.82[AMR][1000 genomes]
rs9548487	0.89[ASN][1000 genomes]
rs9548488	0.83[AMR][1000 genomes]
rs9548510	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548511	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548512	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548516	0.86[ASN][1000 genomes]
rs9548517	0.86[ASN][1000 genomes]
rs9594300	0.96[ASN][1000 genomes]
rs9594303	0.98[ASN][1000 genomes]
rs9603441	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9603444	0.91[AFR][1000 genomes]
rs9603446	0.91[AFR][1000 genomes]
rs9603455	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39394600-39423000	Weak transcription	Fetal Kidney	kidney
3	chr13:39414000-39420800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:39414600-39422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:39414600-39425400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:39415800-39418600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:39416000-39416200	Enhancers	HUES6 Cell Line	embryonic stem cell

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