Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12164864	0.90[AFR][1000 genomes]
rs1333507	0.88[AFR][1000 genomes]
rs4280113	0.92[AFR][1000 genomes]
rs4303350	0.92[AFR][1000 genomes]
rs4536338	0.92[AFR][1000 genomes]
rs4587830	1.00[ASN][1000 genomes]
rs6563641	0.91[AFR][1000 genomes]
rs71198493	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7319670	0.97[EUR][1000 genomes]
rs7322839	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7323599	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7329868	0.97[ASN][1000 genomes]
rs7337847	0.91[AFR][1000 genomes]
rs9315615	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9532289	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9532291	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9548470	0.99[ASN][1000 genomes]
rs9548472	0.91[AFR][1000 genomes]
rs9548510	0.91[AFR][1000 genomes]
rs9548511	0.91[AFR][1000 genomes]
rs9548512	0.91[AFR][1000 genomes]
rs9594299	0.99[ASN][1000 genomes]
rs9603440	0.92[EUR][1000 genomes]
rs9603442	0.97[EUR][1000 genomes]
rs9603443	0.97[EUR][1000 genomes]
rs9603444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603445	0.90[EUR][1000 genomes]
rs9603451	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39394600-39423000	Weak transcription	Fetal Kidney	kidney
3	chr13:39400800-39413400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:39403400-39408000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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