Variant report

Variant	rs4303350
Chromosome Location	chr13:39424847-39424848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:39417841..39420458-chr13:39422744..39425359,3	MCF-7	breast:
2	chr13:39258638..39259440-chr13:39424562..39425453,2	MCF-7	breast:
3	chr13:39338538..39339095-chr13:39424750..39425252,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11618742	0.85[AMR][1000 genomes]
rs12164864	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12869426	0.85[AMR][1000 genomes]
rs12869876	0.85[AMR][1000 genomes]
rs12869917	0.85[AMR][1000 genomes]
rs1333507	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1894106	0.86[ASN][1000 genomes]
rs1894107	0.86[ASN][1000 genomes]
rs1945509	0.86[ASN][1000 genomes]
rs1945510	0.86[ASN][1000 genomes]
rs35944548	0.82[AMR][1000 genomes]
rs36088006	0.85[AMR][1000 genomes]
rs4280113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943614	0.86[ASN][1000 genomes]
rs61948017	0.85[AMR][1000 genomes]
rs61948018	0.85[AMR][1000 genomes]
rs6563638	0.98[ASN][1000 genomes]
rs6563639	0.98[ASN][1000 genomes]
rs6563640	0.98[ASN][1000 genomes]
rs6563641	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71198493	0.96[AFR][1000 genomes]
rs7320992	0.98[ASN][1000 genomes]
rs7322839	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7323599	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7332206	0.86[ASN][1000 genomes]
rs7336199	0.96[ASN][1000 genomes]
rs7337847	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73466004	0.98[ASN][1000 genomes]
rs9315615	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9532288	0.85[AMR][1000 genomes]
rs9532289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9532290	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9532291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9532295	0.86[ASN][1000 genomes]
rs9548470	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9548472	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9548487	0.89[ASN][1000 genomes]
rs9548489	0.85[AMR][1000 genomes]
rs9548490	0.85[AMR][1000 genomes]
rs9548493	0.85[AMR][1000 genomes]
rs9548494	0.85[AMR][1000 genomes]
rs9548495	0.85[AMR][1000 genomes]
rs9548496	0.85[AMR][1000 genomes]
rs9548497	0.85[AMR][1000 genomes]
rs9548499	0.85[AMR][1000 genomes]
rs9548500	0.85[AMR][1000 genomes]
rs9548501	0.85[AMR][1000 genomes]
rs9548502	0.85[AMR][1000 genomes]
rs9548503	0.85[AMR][1000 genomes]
rs9548504	0.85[AMR][1000 genomes]
rs9548505	0.85[AMR][1000 genomes]
rs9548510	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548511	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548512	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548516	0.86[ASN][1000 genomes]
rs9548517	0.86[ASN][1000 genomes]
rs9594300	0.96[ASN][1000 genomes]
rs9594303	0.98[ASN][1000 genomes]
rs9603444	0.92[AFR][1000 genomes]
rs9603446	0.92[AFR][1000 genomes]
rs9603455	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39414600-39425400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:39419000-39430200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
6	chr13:39419600-39425600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:39420800-39427200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:39421000-39433400	Weak transcription	Fetal Stomach	stomach
10	chr13:39421600-39442600	Weak transcription	Fetal Intestine Small	intestine
11	chr13:39422000-39434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:39422200-39443200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:39422600-39426600	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:39422600-39427400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:39423000-39426000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr13:39423000-39426000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr13:39423200-39426000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr13:39423400-39442600	Weak transcription	Liver	Liver
19	chr13:39423600-39425800	Weak transcription	Fetal Lung	lung
20	chr13:39423800-39431200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:39424400-39425000	Weak transcription	Pancreas	Pancrea
23	chr13:39424400-39429800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr13:39424800-39425200	Strong transcription	Fetal Kidney	kidney
25	chr13:39424800-39426200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links