Variant report

Variant	rs73466004
Chromosome Location	chr13:39426979-39426980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12164864	0.96[ASN][1000 genomes]
rs1333507	0.94[ASN][1000 genomes]
rs1894106	0.84[ASN][1000 genomes]
rs1894107	0.84[ASN][1000 genomes]
rs1945509	0.84[ASN][1000 genomes]
rs1945510	0.84[ASN][1000 genomes]
rs4280113	0.98[ASN][1000 genomes]
rs4303350	0.98[ASN][1000 genomes]
rs4536338	0.98[ASN][1000 genomes]
rs4587830	0.84[EUR][1000 genomes]
rs4943614	0.84[ASN][1000 genomes]
rs6563638	0.96[ASN][1000 genomes]
rs6563639	0.96[ASN][1000 genomes]
rs6563640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563641	0.98[ASN][1000 genomes]
rs7320992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7332206	0.84[ASN][1000 genomes]
rs7336199	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7337847	0.98[ASN][1000 genomes]
rs9532295	0.84[ASN][1000 genomes]
rs9548472	0.96[ASN][1000 genomes]
rs9548487	0.90[ASN][1000 genomes]
rs9548510	0.98[ASN][1000 genomes]
rs9548511	0.98[ASN][1000 genomes]
rs9548512	0.98[ASN][1000 genomes]
rs9548516	0.84[ASN][1000 genomes]
rs9548517	0.84[ASN][1000 genomes]
rs9594300	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9594302	0.96[EUR][1000 genomes]
rs9594303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603447	0.88[EUR][1000 genomes]
rs9603451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9603452	1.00[EUR][1000 genomes]
rs9603455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:39419000-39430200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
5	chr13:39420800-39427200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:39421000-39433400	Weak transcription	Fetal Stomach	stomach
8	chr13:39421600-39442600	Weak transcription	Fetal Intestine Small	intestine
9	chr13:39422000-39434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:39422200-39443200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:39422600-39427400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:39423400-39442600	Weak transcription	Liver	Liver
13	chr13:39423800-39431200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:39424400-39429800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr13:39425200-39433400	Weak transcription	Fetal Kidney	kidney
18	chr13:39425400-39427000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:39425800-39431800	Weak transcription	Pancreas	Pancrea
20	chr13:39426000-39428400	Weak transcription	Fetal Lung	lung
21	chr13:39426000-39429600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr13:39426000-39431400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr13:39426200-39429800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr13:39426200-39435400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr13:39426600-39431400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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