Variant report

Variant	rs9594302
Chromosome Location	chr13:39421416-39421417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs4587830	0.80[EUR][1000 genomes]
rs6563640	0.96[EUR][1000 genomes]
rs7320992	0.96[EUR][1000 genomes]
rs7322259	1.00[ASN][1000 genomes]
rs7329868	0.92[EUR][1000 genomes]
rs7335362	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7336199	0.88[EUR][1000 genomes]
rs73466004	0.96[EUR][1000 genomes]
rs9594300	0.84[EUR][1000 genomes]
rs9594303	0.92[EUR][1000 genomes]
rs9603439	1.00[CHB][hapmap]
rs9603440	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9603442	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9603443	1.00[ASN][1000 genomes]
rs9603445	1.00[ASN][1000 genomes]
rs9603447	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603451	0.92[EUR][1000 genomes]
rs9603452	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603455	0.92[EUR][1000 genomes]
rs9603498	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39389400-39423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39394600-39423000	Weak transcription	Fetal Kidney	kidney
3	chr13:39414600-39422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:39414600-39425400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:39419000-39430200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:39419200-39422600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr13:39419200-39423200	Weak transcription	Fetal Heart	heart
10	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
11	chr13:39419400-39423000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr13:39419600-39423000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:39419600-39423400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:39419600-39425600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr13:39420400-39422200	Weak transcription	Pancreas	Pancrea
16	chr13:39420800-39422600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr13:39420800-39427200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr13:39421000-39422000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr13:39421000-39433400	Weak transcription	Fetal Stomach	stomach

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