Variant report

Variant	rs4536338
Chromosome Location	chr13:39430857-39430858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39417946..39420747-chr13:39428999..39430936,2	MCF-7	breast:
2	chr13:39430468..39433096-chr13:39447129..39449184,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11618742	0.85[AMR][1000 genomes]
rs12164864	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12869426	0.85[AMR][1000 genomes]
rs12869876	0.85[AMR][1000 genomes]
rs12869917	0.85[AMR][1000 genomes]
rs1333507	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1894106	0.86[ASN][1000 genomes]
rs1894107	0.86[ASN][1000 genomes]
rs1945509	0.86[ASN][1000 genomes]
rs1945510	0.86[ASN][1000 genomes]
rs35944548	0.82[AMR][1000 genomes]
rs36088006	0.85[AMR][1000 genomes]
rs4280113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505188	0.93[ASW][hapmap];0.83[CEU][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];0.90[YRI][hapmap]
rs4943614	0.86[ASN][1000 genomes]
rs61948017	0.85[AMR][1000 genomes]
rs61948018	0.85[AMR][1000 genomes]
rs6563638	0.98[ASN][1000 genomes]
rs6563639	0.98[ASN][1000 genomes]
rs6563640	0.98[ASN][1000 genomes]
rs6563641	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71198493	0.96[AFR][1000 genomes]
rs7320992	0.98[ASN][1000 genomes]
rs7322839	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7323599	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7332206	0.86[ASN][1000 genomes]
rs7336199	0.96[ASN][1000 genomes]
rs7337847	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73466004	0.98[ASN][1000 genomes]
rs9315615	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9532288	0.85[AMR][1000 genomes]
rs9532289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9532290	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9532291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9532295	0.86[ASN][1000 genomes]
rs9548470	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9548472	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9548487	0.89[ASN][1000 genomes]
rs9548489	0.85[AMR][1000 genomes]
rs9548490	0.85[AMR][1000 genomes]
rs9548493	0.85[AMR][1000 genomes]
rs9548494	0.85[AMR][1000 genomes]
rs9548495	0.85[AMR][1000 genomes]
rs9548496	0.85[AMR][1000 genomes]
rs9548497	0.85[AMR][1000 genomes]
rs9548499	0.85[AMR][1000 genomes]
rs9548500	0.85[AMR][1000 genomes]
rs9548501	0.85[AMR][1000 genomes]
rs9548502	0.85[AMR][1000 genomes]
rs9548503	0.85[AMR][1000 genomes]
rs9548504	0.85[AMR][1000 genomes]
rs9548505	0.85[AMR][1000 genomes]
rs9548510	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548511	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548512	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548516	0.86[ASN][1000 genomes]
rs9548517	0.86[ASN][1000 genomes]
rs9594300	0.96[ASN][1000 genomes]
rs9594303	0.98[ASN][1000 genomes]
rs9603441	0.83[CEU][hapmap]
rs9603444	0.92[AFR][1000 genomes]
rs9603446	0.92[AFR][1000 genomes]
rs9603455	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:39421000-39433400	Weak transcription	Fetal Stomach	stomach
6	chr13:39421600-39442600	Weak transcription	Fetal Intestine Small	intestine
7	chr13:39422000-39434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:39422200-39443200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:39423400-39442600	Weak transcription	Liver	Liver
10	chr13:39423800-39431200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr13:39425200-39433400	Weak transcription	Fetal Kidney	kidney
14	chr13:39425800-39431800	Weak transcription	Pancreas	Pancrea
15	chr13:39426000-39431400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:39426200-39435400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr13:39426600-39431400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr13:39427000-39436400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:39427400-39431200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:39427600-39431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr13:39430400-39436200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr13:39430600-39431000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:39430600-39458000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr13:39430600-39462400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr13:39430800-39433600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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