Variant report

Variant	rs1894107
Chromosome Location	chr13:39449370-39449371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12164864	0.84[ASN][1000 genomes]
rs1333507	0.82[ASN][1000 genomes]
rs1894106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945509	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945510	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280113	0.86[ASN][1000 genomes]
rs4303350	0.86[ASN][1000 genomes]
rs4533148	0.86[CEU][hapmap]
rs4536338	0.86[ASN][1000 genomes]
rs4943614	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563638	0.84[ASN][1000 genomes]
rs6563639	0.84[ASN][1000 genomes]
rs6563640	0.84[ASN][1000 genomes]
rs6563641	0.86[ASN][1000 genomes]
rs7320992	0.84[ASN][1000 genomes]
rs7332206	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336199	0.82[ASN][1000 genomes]
rs7337847	0.86[ASN][1000 genomes]
rs73466004	0.84[ASN][1000 genomes]
rs9532295	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532297	0.83[AMR][1000 genomes]
rs9532298	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9548467	0.86[CEU][hapmap]
rs9548468	0.86[CEU][hapmap]
rs9548472	0.84[ASN][1000 genomes]
rs9548487	0.82[ASN][1000 genomes]
rs9548510	0.86[ASN][1000 genomes]
rs9548511	0.86[ASN][1000 genomes]
rs9548512	0.86[ASN][1000 genomes]
rs9548516	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548517	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548524	0.83[AMR][1000 genomes]
rs9548532	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9594300	0.82[ASN][1000 genomes]
rs9594303	0.84[ASN][1000 genomes]
rs9603455	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
4	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:39430600-39458000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:39430600-39462400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr13:39432200-39458200	Weak transcription	Gastric	stomach
10	chr13:39432600-39468600	Weak transcription	Psoas Muscle	Psoas
11	chr13:39433800-39451000	Weak transcription	Fetal Kidney	kidney
12	chr13:39433800-39456600	Weak transcription	Fetal Stomach	stomach
13	chr13:39436000-39457800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr13:39438800-39450000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:39443200-39450200	Weak transcription	Pancreas	Pancrea
16	chr13:39443600-39452800	Weak transcription	Liver	Liver
17	chr13:39445600-39449600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr13:39445800-39449400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr13:39446400-39458000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:39447000-39457800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr13:39447000-39458800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr13:39447000-39462400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr13:39447000-39462400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr13:39448400-39450600	Enhancers	Brain Cingulate Gyrus	brain
25	chr13:39448600-39449600	Enhancers	Brain Substantia Nigra	brain
26	chr13:39448600-39450000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:39448600-39450000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr13:39448800-39450400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr13:39449000-39449400	Weak transcription	Brain Germinal Matrix	brain
30	chr13:39449000-39449800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr13:39449000-39450600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr13:39449200-39449400	Active TSS	Brain Anterior Caudate	brain
33	chr13:39449200-39449600	Weak transcription	Brain Angular Gyrus	brain
34	chr13:39449200-39450000	Active TSS	Brain Hippocampus Middle	brain
35	chr13:39449200-39450000	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr13:39449200-39453600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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