Variant report

Variant	rs35944548
Chromosome Location	chr13:39425505-39425506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs11618742	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12864816	1.00[ASN][1000 genomes]
rs12869426	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12869876	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12869917	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12875224	1.00[ASN][1000 genomes]
rs1333506	1.00[ASN][1000 genomes]
rs1333508	1.00[ASN][1000 genomes]
rs1945496	1.00[ASN][1000 genomes]
rs34127262	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35252750	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35429023	1.00[ASN][1000 genomes]
rs35459396	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35657252	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35986835	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36088006	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4280113	0.82[AMR][1000 genomes]
rs4287442	1.00[ASN][1000 genomes]
rs4303350	0.82[AMR][1000 genomes]
rs4334155	1.00[ASN][1000 genomes]
rs4369521	1.00[ASN][1000 genomes]
rs4397983	1.00[ASN][1000 genomes]
rs4426230	1.00[ASN][1000 genomes]
rs4426231	1.00[ASN][1000 genomes]
rs4533148	1.00[ASN][1000 genomes]
rs4536338	0.82[AMR][1000 genomes]
rs4643179	1.00[ASN][1000 genomes]
rs4943606	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4943607	1.00[ASN][1000 genomes]
rs4943608	1.00[ASN][1000 genomes]
rs4943609	1.00[ASN][1000 genomes]
rs4943610	1.00[ASN][1000 genomes]
rs4943611	1.00[ASN][1000 genomes]
rs4943612	1.00[ASN][1000 genomes]
rs4943615	1.00[ASN][1000 genomes]
rs61945515	1.00[ASN][1000 genomes]
rs61945516	1.00[ASN][1000 genomes]
rs61945763	1.00[ASN][1000 genomes]
rs61947983	1.00[ASN][1000 genomes]
rs61948017	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61948018	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66889481	1.00[ASN][1000 genomes]
rs71198492	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423186	1.00[ASN][1000 genomes]
rs71423187	1.00[ASN][1000 genomes]
rs71439788	1.00[ASN][1000 genomes]
rs71439789	1.00[ASN][1000 genomes]
rs7328953	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7331927	1.00[ASN][1000 genomes]
rs7982313	1.00[ASN][1000 genomes]
rs9532285	1.00[ASN][1000 genomes]
rs9532287	1.00[ASN][1000 genomes]
rs9532288	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9532289	0.82[AMR][1000 genomes]
rs9532290	0.89[AMR][1000 genomes]
rs9532291	0.82[AMR][1000 genomes]
rs9532294	1.00[ASN][1000 genomes]
rs9532297	1.00[ASN][1000 genomes]
rs9532298	1.00[ASN][1000 genomes]
rs9532310	1.00[ASN][1000 genomes]
rs9548466	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548467	1.00[ASN][1000 genomes]
rs9548468	1.00[ASN][1000 genomes]
rs9548471	1.00[ASN][1000 genomes]
rs9548473	1.00[ASN][1000 genomes]
rs9548474	1.00[ASN][1000 genomes]
rs9548475	1.00[ASN][1000 genomes]
rs9548476	1.00[ASN][1000 genomes]
rs9548478	1.00[ASN][1000 genomes]
rs9548479	1.00[ASN][1000 genomes]
rs9548480	1.00[ASN][1000 genomes]
rs9548488	1.00[ASN][1000 genomes]
rs9548489	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548490	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548492	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548493	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548494	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548495	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548496	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548497	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548498	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548499	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548500	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548501	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548502	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548503	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548504	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548505	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548507	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548515	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9548521	1.00[ASN][1000 genomes]
rs9548523	1.00[ASN][1000 genomes]
rs9548524	1.00[ASN][1000 genomes]
rs9548525	1.00[ASN][1000 genomes]
rs9548531	1.00[ASN][1000 genomes]
rs9548532	1.00[ASN][1000 genomes]
rs9548535	1.00[ASN][1000 genomes]
rs9548552	1.00[ASN][1000 genomes]
rs9548554	1.00[ASN][1000 genomes]
rs9548555	1.00[ASN][1000 genomes]
rs9548556	1.00[ASN][1000 genomes]
rs9548557	1.00[ASN][1000 genomes]
rs9548560	1.00[ASN][1000 genomes]
rs9548562	1.00[ASN][1000 genomes]
rs9548563	1.00[ASN][1000 genomes]
rs9548569	1.00[ASN][1000 genomes]
rs9548573	1.00[ASN][1000 genomes]
rs9548576	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39416200-39450200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:39419000-39430200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:39419000-39449800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:39419200-39452600	Weak transcription	Fetal Intestine Large	intestine
5	chr13:39419600-39425600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:39420800-39427200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:39420800-39454600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:39421000-39433400	Weak transcription	Fetal Stomach	stomach
9	chr13:39421600-39442600	Weak transcription	Fetal Intestine Small	intestine
10	chr13:39422000-39434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:39422200-39443200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:39422600-39426600	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:39422600-39427400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:39423000-39426000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:39423000-39426000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:39423200-39426000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr13:39423400-39442600	Weak transcription	Liver	Liver
18	chr13:39423600-39425800	Weak transcription	Fetal Lung	lung
19	chr13:39423800-39431200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr13:39424400-39429800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr13:39424800-39426200	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr13:39424800-39449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr13:39425000-39425600	Enhancers	GM12878-XiMat	blood
25	chr13:39425200-39425800	Strong transcription	Pancreas	Pancrea
26	chr13:39425200-39433400	Weak transcription	Fetal Kidney	kidney
27	chr13:39425400-39427000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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