Variant report

Variant	rs36010631
Chromosome Location	chr5:37815960-37815961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37814703..37816727-chr5:37818760..37821131,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10055929	0.85[AMR][1000 genomes]
rs10071998	0.85[AMR][1000 genomes]
rs11954051	0.85[AMR][1000 genomes]
rs11957206	0.85[AMR][1000 genomes]
rs13359573	0.85[AMR][1000 genomes]
rs1423430	0.87[AMR][1000 genomes]
rs34034635	0.85[AMR][1000 genomes]
rs58303520	0.87[AMR][1000 genomes]
rs7709443	0.85[AMR][1000 genomes]
rs9292667	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37810800-37816600	Weak transcription	Brain Substantia Nigra	brain
2	chr5:37811000-37816600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr5:37811200-37817200	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:37811200-37818200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:37811400-37816400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:37812000-37816200	Strong transcription	Fetal Stomach	stomach
7	chr5:37812200-37816400	Weak transcription	HSMM	muscle
8	chr5:37812200-37822200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:37812400-37816600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:37812400-37816800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:37812600-37816400	Strong transcription	Osteobl	bone
12	chr5:37812600-37816600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:37812800-37816200	Strong transcription	HSMMtube	muscle
14	chr5:37812800-37817200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:37813000-37816200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:37813000-37816400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:37813000-37816600	Weak transcription	Placenta	Placenta
18	chr5:37813400-37816200	Strong transcription	NHDF-Ad	bronchial
19	chr5:37813400-37824400	Weak transcription	Fetal Kidney	kidney
20	chr5:37813800-37816000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:37814000-37816200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr5:37814000-37816800	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr5:37814000-37817000	Enhancers	HMEC	breast
24	chr5:37814200-37816400	Strong transcription	Colon Smooth Muscle	Colon
25	chr5:37814800-37816000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:37814800-37816200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:37815000-37816000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:37815000-37816200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:37815000-37816200	Weak transcription	Brain Hippocampus Middle	brain
30	chr5:37815000-37816400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr5:37815000-37816400	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:37815000-37817000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:37815000-37822200	Weak transcription	Fetal Intestine Small	intestine
34	chr5:37815200-37816000	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr5:37815200-37816200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:37815200-37816400	Strong transcription	NHEK	skin
37	chr5:37815400-37816200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:37815400-37816600	Weak transcription	NH-A	brain
39	chr5:37815800-37817400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:37815800-37817400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr5:37815800-37830600	Weak transcription	Ovary	ovary

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