Variant report

Variant	rs360165
Chromosome Location	chr11:9876766-9876767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10840314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2645013	0.90[EUR][1000 genomes]
rs2649049	0.83[JPT][hapmap]
rs360159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs360160	0.83[ASN][1000 genomes]
rs360167	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124727	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs780381	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs780382	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs7929434	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs7943244	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9818600-9881400	Weak transcription	Spleen	Spleen
2	chr11:9830400-9880400	Weak transcription	Thymus	Thymus
3	chr11:9830800-9880600	Weak transcription	Fetal Brain Male	brain
4	chr11:9833600-9878800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:9834600-9877200	Weak transcription	Right Ventricle	heart
6	chr11:9837600-9885800	Weak transcription	Hela-S3	cervix
7	chr11:9838600-9879800	Weak transcription	Fetal Thymus	thymus
8	chr11:9848200-9877000	Weak transcription	HepG2	liver
9	chr11:9851200-9880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:9851600-9880400	Weak transcription	Small Intestine	intestine
11	chr11:9853400-9877400	Weak transcription	Brain Substantia Nigra	brain
12	chr11:9854000-9877400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:9854000-9880600	Weak transcription	Colonic Mucosa	Colon
14	chr11:9856600-9880000	Weak transcription	Fetal Heart	heart
15	chr11:9859800-9880200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:9861400-9877000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:9861400-9877400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:9861400-9879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:9861400-9879800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:9861400-9879800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:9861400-9880800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:9863000-9879800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:9863200-9876800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:9863400-9877600	Weak transcription	HMEC	breast
25	chr11:9863400-9880000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:9863600-9879800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr11:9863800-9883800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:9865000-9879800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:9865800-9877200	Weak transcription	Gastric	stomach
30	chr11:9866000-9880400	Weak transcription	Esophagus	oesophagus
31	chr11:9866000-9880400	Weak transcription	Pancreas	Pancrea
32	chr11:9868400-9877200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:9868600-9876800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:9868600-9876800	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:9868600-9883400	Weak transcription	HSMMtube	muscle
36	chr11:9868800-9876800	Weak transcription	NHLF	lung
37	chr11:9868800-9877000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:9868800-9877200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:9868800-9877200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:9868800-9877200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:9868800-9877400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:9868800-9877400	Weak transcription	Brain Angular Gyrus	brain
43	chr11:9868800-9879800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr11:9869000-9876800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:9869000-9876800	Weak transcription	NHEK	skin
46	chr11:9869000-9877400	Weak transcription	Lung	lung
47	chr11:9870600-9878400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:9871600-9877200	Weak transcription	Brain Anterior Caudate	brain
49	chr11:9871600-9877400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:9871800-9876800	Weak transcription	Colon Smooth Muscle	Colon

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