Variant report

Variant	rs780381
Chromosome Location	chr11:9880356-9880357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10840314	0.93[ASN][1000 genomes]
rs2645013	0.87[EUR][1000 genomes]
rs360159	0.93[ASN][1000 genomes]
rs360165	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs360167	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124727	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs780382	0.96[ASN][1000 genomes]
rs7929434	0.90[ASN][1000 genomes]
rs7943244	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9818600-9881400	Weak transcription	Spleen	Spleen
2	chr11:9830400-9880400	Weak transcription	Thymus	Thymus
3	chr11:9830800-9880600	Weak transcription	Fetal Brain Male	brain
4	chr11:9837600-9885800	Weak transcription	Hela-S3	cervix
5	chr11:9851600-9880400	Weak transcription	Small Intestine	intestine
6	chr11:9854000-9880600	Weak transcription	Colonic Mucosa	Colon
7	chr11:9861400-9880800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:9863800-9883800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:9866000-9880400	Weak transcription	Esophagus	oesophagus
10	chr11:9866000-9880400	Weak transcription	Pancreas	Pancrea
11	chr11:9868600-9883400	Weak transcription	HSMMtube	muscle
12	chr11:9875200-9880800	Enhancers	Primary B cells from cord blood	blood
13	chr11:9875400-9881400	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:9876600-9882800	Enhancers	Osteobl	bone
15	chr11:9877000-9881000	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr11:9877600-9890200	Weak transcription	Brain Anterior Caudate	brain
17	chr11:9877800-9897000	Weak transcription	Psoas Muscle	Psoas
18	chr11:9878000-9880400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:9878200-9880400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:9878200-9880400	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:9878200-9880400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:9878200-9880400	Weak transcription	Gastric	stomach
23	chr11:9878200-9880400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:9878200-9880400	Weak transcription	Right Ventricle	heart
25	chr11:9878200-9881400	Enhancers	HepG2	liver
26	chr11:9878200-9883400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:9878200-9883800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr11:9878200-9884000	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:9878200-9884600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:9878200-9892000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:9878200-9897000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:9878400-9880400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:9878400-9880400	Weak transcription	Liver	Liver
34	chr11:9878400-9880400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:9878400-9881200	Weak transcription	Adipose Nuclei	Adipose
36	chr11:9878400-9883400	Weak transcription	HMEC	breast
37	chr11:9878400-9883400	Weak transcription	NHEK	skin
38	chr11:9878400-9891800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:9878400-9893200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:9878400-9916200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:9878600-9881400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr11:9878600-9882000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:9878800-9880400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:9878800-9881400	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr11:9878800-9881600	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr11:9878800-9881600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr11:9878800-9881600	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr11:9878800-9881800	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr11:9878800-9882200	Enhancers	NHLF	lung
50	chr11:9878800-9883600	Weak transcription	Duodenum Mucosa	Duodenum

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