Variant report

Variant	rs36018701
Chromosome Location	chr2:212020548-212020549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10168717	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10176880	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10177360	0.93[ASN][1000 genomes]
rs10201265	0.83[AMR][1000 genomes]
rs10804189	0.83[AMR][1000 genomes]
rs10932369	0.93[ASN][1000 genomes]
rs11681093	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12105101	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12105447	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12105448	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12151374	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12612958	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12618320	0.85[AMR][1000 genomes]
rs12619728	0.95[AFR][1000 genomes]
rs12622440	0.83[AMR][1000 genomes]
rs13009135	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13015726	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1344906	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370611	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370612	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370613	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1437372	0.83[AMR][1000 genomes]
rs1437912	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469928	0.83[AMR][1000 genomes]
rs17737553	0.83[AMR][1000 genomes]
rs1837054	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1837055	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1866196	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2164839	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371169	0.93[ASN][1000 genomes]
rs2887949	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34684280	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35259140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35647425	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35885433	0.83[AMR][1000 genomes]
rs4271704	0.93[ASN][1000 genomes]
rs4422100	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4591289	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4672606	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4673587	0.93[ASN][1000 genomes]
rs4673588	0.93[ASN][1000 genomes]
rs4673589	0.93[ASN][1000 genomes]
rs57547487	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62178182	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62178183	0.93[ASN][1000 genomes]
rs62179762	0.83[AMR][1000 genomes]
rs62179779	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6435608	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6435609	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6714948	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6716813	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6720898	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6720925	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6726901	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6744625	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7421089	0.83[AMR][1000 genomes]
rs7572040	0.91[ASN][1000 genomes]
rs7575042	0.93[ASN][1000 genomes]
rs7575077	0.93[ASN][1000 genomes]
rs7595005	0.83[AMR][1000 genomes]
rs7608912	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875774	chr2:212016056-212047120	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212020000-212021800	Weak transcription	Muscle Satellite Cultured Cells	--

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