Variant report
Variant | rs4673587 |
---|---|
Chromosome Location | chr2:212039636-212039637 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10168717 | 0.97[ASN][1000 genomes] |
rs10176880 | 0.93[ASN][1000 genomes] |
rs10177360 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10932369 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11681093 | 0.83[ASN][1000 genomes] |
rs12105101 | 0.81[ASN][1000 genomes] |
rs12105447 | 0.97[ASN][1000 genomes] |
rs12105448 | 0.97[ASN][1000 genomes] |
rs13009135 | 0.83[ASN][1000 genomes] |
rs13015726 | 0.97[ASN][1000 genomes] |
rs1344906 | 0.95[ASN][1000 genomes] |
rs1370611 | 0.97[ASN][1000 genomes] |
rs1370612 | 0.97[ASN][1000 genomes] |
rs1370613 | 0.97[ASN][1000 genomes] |
rs1437912 | 0.93[ASN][1000 genomes] |
rs1837054 | 0.83[ASN][1000 genomes] |
rs1837055 | 0.83[ASN][1000 genomes] |
rs1866196 | 0.97[ASN][1000 genomes] |
rs2164839 | 0.93[ASN][1000 genomes] |
rs2371169 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2887949 | 0.83[ASN][1000 genomes] |
rs34684280 | 0.97[ASN][1000 genomes] |
rs35259140 | 0.88[ASN][1000 genomes] |
rs35647425 | 0.97[ASN][1000 genomes] |
rs36018701 | 0.93[ASN][1000 genomes] |
rs4271704 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4422100 | 0.96[ASN][1000 genomes] |
rs4591289 | 0.96[ASN][1000 genomes] |
rs4672606 | 0.97[ASN][1000 genomes] |
rs4673588 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4673589 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57547487 | 0.97[ASN][1000 genomes] |
rs62178182 | 0.97[ASN][1000 genomes] |
rs62178183 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62179779 | 0.83[ASN][1000 genomes] |
rs6435608 | 0.96[ASN][1000 genomes] |
rs6435609 | 0.96[ASN][1000 genomes] |
rs6714948 | 0.93[ASN][1000 genomes] |
rs6716813 | 0.97[ASN][1000 genomes] |
rs6720898 | 0.95[ASN][1000 genomes] |
rs6720925 | 0.97[ASN][1000 genomes] |
rs6726901 | 0.83[ASN][1000 genomes] |
rs6744625 | 0.83[ASN][1000 genomes] |
rs7572040 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7575042 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7575077 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012193 | chr2:211684524-212072213 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv834521 | chr2:211918881-212057872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv875773 | chr2:211973600-212041403 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv875774 | chr2:212016056-212047120 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv875775 | chr2:212021755-212047120 | Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | esv3413133 | chr2:212037559-212041187 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:212039000-212045800 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |