Variant report

Variant	rs62179779
Chromosome Location	chr2:212003244-212003245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10168717	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10174373	0.84[ASN][1000 genomes]
rs10176880	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10177360	0.83[ASN][1000 genomes]
rs10201265	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10804189	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10932367	0.84[ASN][1000 genomes]
rs10932369	0.83[ASN][1000 genomes]
rs11681093	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694662	0.84[ASN][1000 genomes]
rs12105101	0.81[EUR][1000 genomes]
rs12105447	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12105448	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12151374	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12612958	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12618320	0.80[AMR][1000 genomes]
rs12619728	0.84[ASN][1000 genomes]
rs12622440	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13009135	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13015726	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1344906	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1370611	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1370612	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1370613	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1437372	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1437912	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1437929	0.82[ASN][1000 genomes]
rs1469928	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17737553	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1837054	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837055	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866196	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2164839	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2371169	0.83[ASN][1000 genomes]
rs2887949	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34684280	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35259140	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35647425	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35652091	0.84[ASN][1000 genomes]
rs35885433	0.83[AMR][1000 genomes]
rs36018701	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4271704	0.83[ASN][1000 genomes]
rs4422100	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4591289	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4672606	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4673587	0.83[ASN][1000 genomes]
rs4673588	0.83[ASN][1000 genomes]
rs4673589	0.83[ASN][1000 genomes]
rs57547487	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62178182	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62178183	0.83[ASN][1000 genomes]
rs62179762	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6435608	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6435609	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6714948	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6716813	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6720898	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6720925	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6726901	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6744625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7421089	0.83[AMR][1000 genomes]
rs7572040	0.81[ASN][1000 genomes]
rs7575042	0.83[ASN][1000 genomes]
rs7575077	0.83[ASN][1000 genomes]
rs7595005	0.83[AMR][1000 genomes]
rs7608912	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211998800-212004600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:211998800-212009400	Weak transcription	HSMM	muscle

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