Variant report

Variant	rs36033
Chromosome Location	chr5:60960727-60960728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1467350	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2455486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs414976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60953600-60963000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:60955600-60962000	Weak transcription	Brain Angular Gyrus	brain
4	chr5:60956000-60962000	Weak transcription	Pancreas	Pancrea
5	chr5:60956400-60963000	Weak transcription	Fetal Intestine Small	intestine
6	chr5:60956800-60961800	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:60957000-60961800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:60957000-60962000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:60957200-60961800	Weak transcription	Brain Anterior Caudate	brain
10	chr5:60957200-60961800	Weak transcription	Brain Substantia Nigra	brain
11	chr5:60960000-60962000	Weak transcription	Spleen	Spleen
12	chr5:60960600-60960800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:60960600-60960800	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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