Variant report

Variant	rs414976
Chromosome Location	chr5:60965517-60965518
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1467350	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16875007	0.87[LWK][hapmap]
rs2280687	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2455486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4700422	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4700423	0.87[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60962000-60965600	Enhancers	Brain Cingulate Gyrus	brain
3	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
4	chr5:60962400-60965600	Enhancers	Brain Anterior Caudate	brain
5	chr5:60962600-60968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:60962600-60968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:60963200-60965600	Enhancers	Spleen	Spleen
9	chr5:60963400-60968400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:60964000-60965600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:60964000-60968600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:60964200-60965800	Enhancers	Brain Substantia Nigra	brain
13	chr5:60964200-60968200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:60964200-60968200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:60964200-60968600	Weak transcription	Fetal Kidney	kidney
16	chr5:60964200-60969000	Weak transcription	Adipose Nuclei	Adipose
17	chr5:60964200-60969000	Weak transcription	Pancreas	Pancrea
18	chr5:60964400-60968200	Weak transcription	Colonic Mucosa	Colon
19	chr5:60964400-60968200	Weak transcription	Fetal Intestine Large	intestine
20	chr5:60964400-60968200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:60964400-60968800	Weak transcription	Brain Angular Gyrus	brain
22	chr5:60964400-60970400	Weak transcription	Small Intestine	intestine
23	chr5:60964600-60968200	Weak transcription	Fetal Intestine Small	intestine
24	chr5:60964600-60968200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:60964800-60965600	Enhancers	HMEC	breast
26	chr5:60965000-60968200	Weak transcription	Brain Hippocampus Middle	brain
27	chr5:60965000-60968800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr5:60965200-60965600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:60965200-60965600	Enhancers	Fetal Lung	lung
30	chr5:60965200-60966200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr5:60965200-60968200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:60965400-60965600	Enhancers	Ovary	ovary
33	chr5:60965400-60965600	Flanking Active TSS	HSMMtube	muscle
34	chr5:60965400-60968200	Weak transcription	NHEK	skin
35	chr5:60965400-60968400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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