Variant report

Variant	rs1467350
Chromosome Location	chr5:60963848-60963849
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2280687	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2455486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs414976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4700422	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4700423	1.00[YRI][hapmap];0.82[AFR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60960800-60965400	Weak transcription	Ovary	ovary
3	chr5:60962000-60965600	Enhancers	Brain Cingulate Gyrus	brain
4	chr5:60962200-60965000	Enhancers	Brain Hippocampus Middle	brain
5	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
6	chr5:60962400-60964200	Enhancers	Adipose Nuclei	Adipose
7	chr5:60962400-60964400	Enhancers	Liver	Liver
8	chr5:60962400-60965000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr5:60962400-60965600	Enhancers	Brain Anterior Caudate	brain
10	chr5:60962600-60968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:60962600-60968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:60963000-60964000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:60963000-60964200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr5:60963000-60964400	Enhancers	Fetal Intestine Large	intestine
16	chr5:60963000-60964600	Enhancers	Fetal Intestine Small	intestine
17	chr5:60963200-60965600	Enhancers	Spleen	Spleen
18	chr5:60963400-60964200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:60963400-60964600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr5:60963400-60968400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr5:60963600-60964000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:60963600-60964200	Enhancers	Fetal Kidney	kidney
23	chr5:60963600-60964400	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr5:60963600-60965400	Enhancers	Placenta	Placenta
25	chr5:60963800-60964000	Enhancers	Lung	lung
26	chr5:60963800-60964200	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr5:60963800-60964200	Enhancers	Duodenum Mucosa	Duodenum
28	chr5:60963800-60964200	Enhancers	Pancreas	Pancrea
29	chr5:60963800-60964400	Enhancers	Brain Angular Gyrus	brain
30	chr5:60963800-60964400	Enhancers	Colonic Mucosa	Colon
31	chr5:60963800-60964400	Enhancers	Small Intestine	intestine
32	chr5:60963800-60964600	Enhancers	Right Atrium	heart

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