Variant report

Variant	rs2280687
Chromosome Location	chr5:60964939-60964940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1032750	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10514916	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12522477	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12523615	0.91[EUR][1000 genomes]
rs12654405	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1467350	0.82[AFR][1000 genomes]
rs1501842	0.91[CEU][hapmap]
rs1501843	0.88[EUR][1000 genomes]
rs1501844	0.88[EUR][1000 genomes]
rs1604440	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1604441	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16875007	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893327	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16893398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893616	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16893642	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16893680	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16893684	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16893698	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs16893701	0.88[EUR][1000 genomes]
rs1979016	0.80[CEU][hapmap]
rs2030888	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2280686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2937626	0.81[EUR][1000 genomes]
rs2937831	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2950219	0.84[EUR][1000 genomes]
rs2950220	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2974452	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4145723	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs414976	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4700422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4700423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4700425	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4700427	0.89[EUR][1000 genomes]
rs55680328	0.88[EUR][1000 genomes]
rs58983571	0.88[EUR][1000 genomes]
rs9291733	0.82[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60960800-60965400	Weak transcription	Ovary	ovary
3	chr5:60962000-60965600	Enhancers	Brain Cingulate Gyrus	brain
4	chr5:60962200-60965000	Enhancers	Brain Hippocampus Middle	brain
5	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
6	chr5:60962400-60965000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr5:60962400-60965600	Enhancers	Brain Anterior Caudate	brain
8	chr5:60962600-60968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:60962600-60968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:60963200-60965600	Enhancers	Spleen	Spleen
12	chr5:60963400-60968400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr5:60963600-60965400	Enhancers	Placenta	Placenta
14	chr5:60964000-60965200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:60964000-60965600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:60964000-60968600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:60964200-60965200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:60964200-60965800	Enhancers	Brain Substantia Nigra	brain
19	chr5:60964200-60968200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:60964200-60968200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:60964200-60968600	Weak transcription	Fetal Kidney	kidney
22	chr5:60964200-60969000	Weak transcription	Adipose Nuclei	Adipose
23	chr5:60964200-60969000	Weak transcription	Pancreas	Pancrea
24	chr5:60964400-60965200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:60964400-60968200	Weak transcription	Colonic Mucosa	Colon
26	chr5:60964400-60968200	Weak transcription	Fetal Intestine Large	intestine
27	chr5:60964400-60968200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:60964400-60968800	Weak transcription	Brain Angular Gyrus	brain
29	chr5:60964400-60970400	Weak transcription	Small Intestine	intestine
30	chr5:60964600-60968200	Weak transcription	Fetal Intestine Small	intestine
31	chr5:60964600-60968200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:60964800-60965400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:60964800-60965400	Enhancers	NHEK	skin
34	chr5:60964800-60965600	Enhancers	HMEC	breast

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