Variant report

Variant	rs1979016
Chromosome Location	chr5:61033393-61033394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr5:61031973-61034053	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr5:61033009-61034276	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr5:61033038-61034335	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000251575	TF binding region

rs_ID	r²[population]
rs1032750	0.91[CEU][hapmap]
rs10514916	0.87[CEU][hapmap]
rs12522477	0.80[CEU][hapmap]
rs1501842	0.87[CEU][hapmap]
rs1604440	0.80[CEU][hapmap]
rs16875007	0.86[CEU][hapmap]
rs16893327	0.80[CEU][hapmap]
rs16893398	0.87[CEU][hapmap]
rs16893470	0.80[CEU][hapmap]
rs16893642	0.80[CEU][hapmap]
rs16893680	0.87[CEU][hapmap]
rs16893684	0.87[CEU][hapmap]
rs2030888	0.87[CEU][hapmap]
rs2030891	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2280686	0.87[CEU][hapmap]
rs2280687	0.80[CEU][hapmap]
rs2937622	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2937623	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2937831	0.80[CEU][hapmap]
rs2950218	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2950220	0.83[CEU][hapmap]
rs2974452	0.87[CEU][hapmap]
rs4145723	0.80[CEU][hapmap]
rs4700422	0.80[CEU][hapmap]
rs4700423	0.87[CEU][hapmap]
rs4700425	0.87[CEU][hapmap]
rs6449548	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7446832	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7447792	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs921038	0.91[CEU][hapmap]

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61029000-61035800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:61029000-61040000	Weak transcription	Pancreas	Pancrea
3	chr5:61030000-61033600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:61030800-61033600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:61031200-61033600	Enhancers	HSMM	muscle
6	chr5:61031400-61033600	Enhancers	Fetal Lung	lung
7	chr5:61031400-61034000	Enhancers	HSMMtube	muscle
8	chr5:61031400-61034400	Enhancers	Brain Anterior Caudate	brain
9	chr5:61031800-61033600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:61031800-61033600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:61032000-61033400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:61032000-61033600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:61032000-61033600	Enhancers	Placenta	Placenta
14	chr5:61032000-61034000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:61032200-61033400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:61032200-61033600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr5:61032200-61033600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:61032200-61033600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:61032200-61033600	Enhancers	Fetal Muscle Trunk	muscle
20	chr5:61032200-61034000	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr5:61032200-61034000	Enhancers	Brain Substantia Nigra	brain
22	chr5:61032400-61033600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr5:61032400-61033600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:61032400-61033600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:61032600-61033400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr5:61032600-61033600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:61032600-61033600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:61032800-61033400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:61032800-61033600	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr5:61032800-61034400	Enhancers	Fetal Kidney	kidney
31	chr5:61032800-61036800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:61033000-61033400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr5:61033000-61033400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:61033000-61033400	Flanking Active TSS	Fetal Brain Male	brain
35	chr5:61033000-61033600	Enhancers	Primary hematopoietic stem cells	blood
36	chr5:61033200-61033400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr5:61033200-61033400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr5:61033200-61033400	Enhancers	Brain Hippocampus Middle	brain
39	chr5:61033200-61033600	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr5:61033200-61033800	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr5:61033200-61034400	Flanking Active TSS	Fetal Brain Female	brain

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