Variant report

Variant	rs16893642
Chromosome Location	chr5:60978500-60978501
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:60978377-60978834	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60975947..60978578-chr5:60982445..60984027,2	K562	blood:

Variant related genes	Relation type
C5orf64	TF binding region
ENSG00000178722	Chromatin interaction
ENSG00000248529	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1032750	0.95[CEU][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10514916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522477	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12523615	0.91[EUR][1000 genomes]
rs1501842	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1501843	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501844	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16875007	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16893327	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16893398	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs16893470	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16893616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893698	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893701	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1979016	0.80[CEU][hapmap]
rs2030888	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2280686	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2280687	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2937626	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2937831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2950219	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2950220	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2974452	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4145723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4700422	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4700423	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4700425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55680328	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58983571	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7381041	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9291733	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60972400-60980400	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:60975600-60979000	Weak transcription	Brain Substantia Nigra	brain
3	chr5:60975600-60982400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:60976400-60981000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:60976600-60982200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:60977000-60979200	Weak transcription	Fetal Intestine Small	intestine
7	chr5:60978200-60979200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:60978400-60979200	Enhancers	Brain Anterior Caudate	brain

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