Variant report

Variant	rs16893327
Chromosome Location	chr5:60954719-60954720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:60954225..60954982-chr5:61229491..61230129,2	K562	blood:
2	chr5:60254798..60255532-chr5:60954065..60954863,2	K562	blood:
3	chr5:60626402..60629468-chr5:60952559..60956981,4	MCF-7	breast:
4	chr5:60899141..60899960-chr5:60954496..60955069,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C5orf43-4	chr5:60954301-60956006	ENSG00000248529.1
2	lnc-C5orf43-4	chr5:60954318-60956006	NONHSAT101680

No data

Variant related genes	Relation type
ENSG00000130449	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1032750	0.95[CEU][hapmap]
rs10514916	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12522477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12523615	0.83[EUR][1000 genomes]
rs12654405	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658207	0.80[JPT][hapmap]
rs1501842	0.91[CEU][hapmap]
rs1604440	1.00[CEU][hapmap]
rs1604441	1.00[CEU][hapmap]
rs16875007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893398	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893470	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16893616	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16893642	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16893680	1.00[CEU][hapmap]
rs16893684	1.00[CEU][hapmap]
rs16893698	0.95[CEU][hapmap]
rs1979016	0.80[CEU][hapmap]
rs2030888	0.95[CEU][hapmap]
rs2280686	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280687	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2937831	1.00[CEU][hapmap]
rs2950220	1.00[CEU][hapmap]
rs2974452	1.00[CEU][hapmap]
rs4145723	1.00[CEU][hapmap]
rs4700422	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4700423	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4700425	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4700427	0.81[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60950800-60957200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:60952200-60956600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:60952600-60955000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:60952600-60955000	Enhancers	Brain Substantia Nigra	brain
6	chr5:60952600-60955000	Enhancers	Fetal Kidney	kidney
7	chr5:60952800-60954800	Enhancers	Brain Hippocampus Middle	brain
8	chr5:60953600-60963000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:60954000-60955000	Enhancers	Brain Anterior Caudate	brain
10	chr5:60954200-60954800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:60954200-60954800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:60954200-60954800	Enhancers	Adipose Nuclei	Adipose
13	chr5:60954200-60954800	Enhancers	Brain Cingulate Gyrus	brain
14	chr5:60954200-60954800	Enhancers	A549	lung
15	chr5:60954200-60955000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr5:60954200-60955600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:60954400-60954800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:60954400-60954800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:60954400-60954800	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:60954400-60954800	Enhancers	Fetal Heart	heart
21	chr5:60954400-60954800	Enhancers	Fetal Muscle Trunk	muscle
22	chr5:60954400-60955000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:60954400-60955200	Enhancers	Gastric	stomach
24	chr5:60954600-60954800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr5:60954600-60954800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr5:60954600-60954800	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr5:60954600-60955000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr5:60954600-60955000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr5:60954600-60955000	Enhancers	Fetal Intestine Large	intestine
30	chr5:60954600-60955000	Enhancers	Fetal Intestine Small	intestine
31	chr5:60954600-60955000	Enhancers	Left Ventricle	heart
32	chr5:60954600-60955200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr5:60954600-60955200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:60954600-60955200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr5:60954600-60955600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr5:60954600-60955600	Active TSS	Right Ventricle	heart

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