Variant report

Variant	rs16893470
Chromosome Location	chr5:60968872-60968873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1032750	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs10514916	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12522477	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12523615	0.93[EUR][1000 genomes]
rs12654405	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1501842	0.91[CEU][hapmap]
rs1501843	0.89[EUR][1000 genomes]
rs1501844	0.89[EUR][1000 genomes]
rs1604440	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1604441	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16875007	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893327	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16893398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893616	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16893642	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs16893680	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16893684	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16893698	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs16893701	0.89[EUR][1000 genomes]
rs1979016	0.80[CEU][hapmap]
rs2030888	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2280686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2280687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937831	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2950219	0.86[EUR][1000 genomes]
rs2950220	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2974452	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4145723	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4700422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4700423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4700425	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4700427	0.91[EUR][1000 genomes]
rs55680328	0.89[EUR][1000 genomes]
rs58983571	0.89[EUR][1000 genomes]
rs9291733	0.81[EUR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:60962200-60969000	Weak transcription	Left Ventricle	heart
3	chr5:60962600-60969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:60964200-60969000	Weak transcription	Adipose Nuclei	Adipose
5	chr5:60964200-60969000	Weak transcription	Pancreas	Pancrea
6	chr5:60964400-60970400	Weak transcription	Small Intestine	intestine
7	chr5:60966200-60970800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:60967600-60970800	Enhancers	Primary B cells from peripheral blood	blood
9	chr5:60968000-60970200	Enhancers	Primary B cells from cord blood	blood
10	chr5:60968000-60970200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:60968000-60972000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:60968200-60969000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr5:60968200-60969400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:60968200-60969400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr5:60968200-60969400	Enhancers	NHEK	skin
16	chr5:60968200-60969600	Enhancers	Fetal Muscle Leg	muscle
17	chr5:60968200-60970600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:60968200-60971200	Enhancers	Brain Anterior Caudate	brain
19	chr5:60968200-60971200	Enhancers	Brain Hippocampus Middle	brain
20	chr5:60968200-60971400	Enhancers	Colonic Mucosa	Colon
21	chr5:60968200-60971400	Enhancers	Fetal Intestine Large	intestine
22	chr5:60968200-60971400	Enhancers	Fetal Intestine Small	intestine
23	chr5:60968400-60969000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr5:60968400-60969200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr5:60968400-60969200	Enhancers	Stomach Mucosa	stomach
26	chr5:60968400-60969200	Enhancers	HSMMtube	muscle
27	chr5:60968400-60969400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr5:60968400-60969400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:60968400-60969600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:60968400-60969600	Enhancers	Primary hematopoietic stem cells	blood
31	chr5:60968400-60969600	Enhancers	Placenta	Placenta
32	chr5:60968400-60970200	Enhancers	HMEC	breast
33	chr5:60968400-60971800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:60968400-60971800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr5:60968400-60972400	Enhancers	Brain Cingulate Gyrus	brain
36	chr5:60968600-60969000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:60968600-60969000	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr5:60968600-60969400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:60968600-60969400	Enhancers	NH-A	brain
40	chr5:60968600-60969800	Enhancers	Fetal Kidney	kidney
41	chr5:60968600-60969800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr5:60968600-60970000	Enhancers	Fetal Lung	lung
43	chr5:60968600-60971200	Enhancers	Brain Substantia Nigra	brain
44	chr5:60968800-60969000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:60968800-60969200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:60968800-60969400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:60968800-60969400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr5:60968800-60969400	Enhancers	Lung	lung
49	chr5:60968800-60969400	Enhancers	HSMM	muscle
50	chr5:60968800-60969800	Enhancers	Duodenum Smooth Muscle	Duodenum

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