Variant report

Variant	rs2974452
Chromosome Location	chr5:60995261-60995262
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1032750	0.95[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10514916	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12522477	1.00[CEU][hapmap]
rs12523615	0.88[EUR][1000 genomes]
rs1501842	0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1501843	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1501844	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1604440	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1604441	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16875007	1.00[CEU][hapmap]
rs16893327	1.00[CEU][hapmap]
rs16893398	1.00[CEU][hapmap]
rs16893470	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16893616	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16893642	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16893680	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16893684	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16893698	0.95[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16893701	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1979016	0.87[CEU][hapmap]
rs2030888	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280686	1.00[CEU][hapmap]
rs2280687	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2937626	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2937831	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2950219	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2950220	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145723	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4700422	1.00[CEU][hapmap]
rs4700423	1.00[CEU][hapmap]
rs4700425	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700427	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55680328	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58983571	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6449547	0.80[YRI][hapmap]
rs7381041	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9291733	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2974452	FAM129A	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60993800-60995400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60994400-60997400	Weak transcription	Adipose Nuclei	Adipose
3	chr5:60994400-61002400	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:60994800-60997400	Weak transcription	Lung	lung
5	chr5:60994800-60999400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:60994800-61002600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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