Variant report

Variant	rs16893680
Chromosome Location	chr5:60981850-60981851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1032750	0.95[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10514916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12522477	1.00[CEU][hapmap]
rs12523615	0.90[EUR][1000 genomes]
rs1501842	0.91[CEU][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1501843	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1501844	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1604440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1604441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16875007	1.00[CEU][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes]
rs16893327	1.00[CEU][hapmap]
rs16893398	1.00[CEU][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes]
rs16893470	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16893616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893684	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893698	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893701	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1979016	0.87[CEU][hapmap]
rs2030888	0.95[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2280686	1.00[CEU][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes]
rs2280687	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2937626	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2937831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2950219	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2950220	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2974452	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4145723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700422	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs4700423	1.00[CEU][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes]
rs4700425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4700427	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55680328	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58983571	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7381041	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9291733	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60975600-60982400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60976600-60982200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:60979200-60983400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:60979600-60982800	Weak transcription	Fetal Intestine Small	intestine
5	chr5:60980400-60982400	Enhancers	Brain Substantia Nigra	brain
6	chr5:60980400-60983000	Enhancers	Brain Hippocampus Middle	brain
7	chr5:60981000-60983800	Enhancers	Brain Anterior Caudate	brain
8	chr5:60981600-60982800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:60981600-60982800	Enhancers	Brain Angular Gyrus	brain
10	chr5:60981800-60983000	Enhancers	Small Intestine	intestine
11	chr5:60981800-60984000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:60981800-60984000	Enhancers	HMEC	breast

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