Variant report

Variant	rs16893698
Chromosome Location	chr5:60983772-60983773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C5orf43-4	chr5:60983672-60983841	ENSG00000248529.1
2	lnc-C5orf43-4	chr5:60983672-60983841	NONHSAT101680
3	lnc-C5orf43-4	chr5:60983672-60983841	NONHSAT101682
4	lnc-C5orf43-4	chr5:60983672-60983841	NR_109910

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1032750	0.90[CEU][hapmap];0.81[CHB][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10514916	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12518552	0.86[JPT][hapmap]
rs12522477	0.95[CEU][hapmap]
rs12523615	0.90[EUR][1000 genomes]
rs1501842	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1501843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604440	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604441	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875007	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs16893327	0.95[CEU][hapmap]
rs16893398	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs16893470	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs16893616	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893642	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893680	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893684	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030888	0.90[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2280686	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2280687	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs2937626	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2937831	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950219	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2950220	0.95[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2974452	0.95[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4145723	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4700422	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs4700423	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs4700425	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4700427	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55680328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58983571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880870	0.86[JPT][hapmap]
rs7381041	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9291733	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60981000-60983800	Enhancers	Brain Anterior Caudate	brain
2	chr5:60981800-60984000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:60981800-60984000	Enhancers	HMEC	breast
4	chr5:60982000-60984000	Enhancers	HSMMtube	muscle
5	chr5:60982400-60984000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:60982400-60984200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr5:60982400-60987800	Weak transcription	Brain Substantia Nigra	brain
8	chr5:60982800-60983800	Enhancers	HSMM	muscle
9	chr5:60983400-60984000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr5:60983400-60985800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:60983600-60983800	Enhancers	Brain Hippocampus Middle	brain

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