Variant report

Variant	rs2950220
Chromosome Location	chr5:60994164-60994165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C5orf43-4	chr5:60993739-60994259	ENSG00000248529.1
2	lnc-C5orf43-4	chr5:60993739-60994259	NR_109910
3	lnc-C5orf43-4	chr5:60993721-60994229	NONHSAT101685
4	lnc-C5orf43-4	chr5:60994094-60994229	NONHSAT101686
5	lnc-C5orf43-4	chr5:60994094-60994229	NONHSAT101687

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1032750	0.95[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10514916	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12522477	1.00[CEU][hapmap]
rs12523615	0.88[EUR][1000 genomes]
rs1501842	0.91[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1501843	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1501844	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1604440	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1604441	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16875007	1.00[CEU][hapmap]
rs16893327	1.00[CEU][hapmap]
rs16893398	1.00[CEU][hapmap]
rs16893470	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16893616	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16893642	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16893680	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16893684	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16893698	0.95[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16893701	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1979016	0.83[CEU][hapmap]
rs2030888	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280686	1.00[CEU][hapmap]
rs2280687	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2937626	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2937831	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2950219	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2950221	0.80[JPT][hapmap]
rs2974452	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145723	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4700422	1.00[CEU][hapmap]
rs4700423	1.00[CEU][hapmap]
rs4700425	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700427	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55680328	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58983571	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7381041	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9291733	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60993400-60994200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:60993600-60994400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr5:60993800-60994400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:60993800-60994400	Enhancers	Spleen	Spleen
5	chr5:60993800-60994800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:60993800-60994800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:60993800-60995400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:60994000-60994400	Enhancers	Adipose Nuclei	Adipose
9	chr5:60994000-60994400	Enhancers	Fetal Muscle Leg	muscle
10	chr5:60994000-60994800	Enhancers	Lung	lung

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