Variant report

Variant	rs4700427
Chromosome Location	chr5:60979340-60979341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:60978973-60980267	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
C5orf64	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1032750	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10514916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522477	0.81[EUR][1000 genomes]
rs12523615	0.91[EUR][1000 genomes]
rs1501842	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1501843	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501844	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604440	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16875007	0.82[EUR][1000 genomes]
rs16893327	0.81[EUR][1000 genomes]
rs16893398	0.82[EUR][1000 genomes]
rs16893470	0.91[EUR][1000 genomes]
rs16893616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893642	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893680	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893684	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16893698	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2030888	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2280686	0.82[EUR][1000 genomes]
rs2280687	0.89[EUR][1000 genomes]
rs2937626	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2937831	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2950219	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2950220	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2974452	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4145723	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4700422	0.82[EUR][1000 genomes]
rs4700423	0.82[EUR][1000 genomes]
rs4700425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55680328	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58983571	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7381041	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9291733	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60972400-60980400	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:60975600-60982400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:60976400-60981000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:60976600-60982200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:60979000-60979400	Enhancers	Brain Substantia Nigra	brain
6	chr5:60979200-60979600	Enhancers	Fetal Intestine Small	intestine
7	chr5:60979200-60981000	Weak transcription	Brain Anterior Caudate	brain
8	chr5:60979200-60983400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links