Variant report

Variant	rs1501842
Chromosome Location	chr5:61002747-61002748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:61002483..61004885-chr5:61012609..61014219,2	MCF-7	breast:
2	chr5:60993683..60995271-chr5:61002348..61004961,2	K562	blood:

Variant related genes	Relation type
ENSG00000248529	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1032750	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10514916	0.91[CEU][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12522477	0.91[CEU][hapmap]
rs1501843	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1501844	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1604440	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1604441	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16875007	0.91[CEU][hapmap]
rs16893327	0.91[CEU][hapmap]
rs16893398	0.91[CEU][hapmap]
rs16893470	0.91[CEU][hapmap]
rs16893616	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16893642	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16893680	0.91[CEU][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16893684	0.91[CEU][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16893698	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16893701	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1979016	0.87[CEU][hapmap]
rs2030888	0.86[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2280686	0.91[CEU][hapmap]
rs2280687	0.91[CEU][hapmap]
rs2937626	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2937831	0.91[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2950219	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2950220	0.91[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2974452	0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4145723	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4700422	0.91[CEU][hapmap]
rs4700423	0.91[CEU][hapmap];0.83[MEX][hapmap]
rs4700425	0.91[CEU][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4700427	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55680328	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58983571	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6449548	0.82[ASN][1000 genomes]
rs7381041	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7446832	0.82[ASN][1000 genomes]
rs7447792	0.82[ASN][1000 genomes]
rs9291733	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs973471	0.83[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60997800-61015200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:60998000-61003600	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:61000400-61002800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:61001400-61003400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:61001600-61002800	Weak transcription	HMEC	breast
6	chr5:61002400-61002800	Enhancers	Brain Cingulate Gyrus	brain
7	chr5:61002400-61003000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:61002400-61003000	Enhancers	Fetal Muscle Leg	muscle
9	chr5:61002400-61003000	Enhancers	Lung	lung
10	chr5:61002600-61002800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:61002600-61003000	Enhancers	Brain Substantia Nigra	brain
12	chr5:61002600-61003200	Enhancers	Adipose Nuclei	Adipose
13	chr5:61002600-61003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:61002600-61003400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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