Variant report

Variant	rs7447792
Chromosome Location	chr5:61015098-61015099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1032750	1.00[ASW][hapmap];0.86[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10514916	1.00[ASW][hapmap];0.82[CEU][hapmap];0.86[GIH][hapmap]
rs12522477	0.82[CEU][hapmap]
rs1501842	0.82[CEU][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1604440	0.82[CEU][hapmap]
rs1604441	0.82[CEU][hapmap]
rs16875007	0.81[CEU][hapmap]
rs16893327	0.82[CEU][hapmap]
rs16893398	0.82[CEU][hapmap]
rs16893470	0.82[CEU][hapmap]
rs16893616	0.86[CEU][hapmap]
rs16893642	0.82[CEU][hapmap]
rs16893680	0.82[CEU][hapmap];0.86[GIH][hapmap]
rs16893684	0.82[CEU][hapmap];0.86[GIH][hapmap]
rs1979016	0.87[CEU][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2030888	1.00[ASW][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs2030891	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2280686	0.82[CEU][hapmap]
rs2280687	0.82[CEU][hapmap]
rs2937623	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2937626	0.87[ASN][1000 genomes]
rs2937831	0.82[CEU][hapmap]
rs2950218	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2950220	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs2974452	0.82[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap]
rs4145723	0.82[CEU][hapmap]
rs4700422	0.82[CEU][hapmap]
rs4700423	0.82[CEU][hapmap]
rs4700425	1.00[ASW][hapmap];0.82[CEU][hapmap];0.86[GIH][hapmap]
rs6449548	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7381041	0.82[ASN][1000 genomes]
rs7446832	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9291733	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7447792	LRRC70	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60997800-61015200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:61014400-61015400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:61014800-61015600	Enhancers	Brain Cingulate Gyrus	brain

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