Variant report

Variant	rs36055647
Chromosome Location	chr8:79119599-79119600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs13254490	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254799	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265230	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13266447	0.89[AFR][1000 genomes]
rs13266679	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13274740	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17484756	1.00[EUR][1000 genomes]
rs17485419	1.00[ASN][1000 genomes]
rs1820997	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2369095	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2369096	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34064734	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34219583	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34294037	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34447318	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34491063	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34607943	0.93[AMR][1000 genomes]
rs34678843	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34963073	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35208372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35245347	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35316312	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35334031	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35579758	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35685676	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35711420	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36002580	0.89[AFR][1000 genomes]
rs4551342	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510296	0.89[AFR][1000 genomes]
rs62510332	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510333	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62517358	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6988476	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71500592	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71533167	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71533168	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79112400-79120400	Weak transcription	Hela-S3	cervix
2	chr8:79112800-79120000	Weak transcription	Osteobl	bone
3	chr8:79113000-79119800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:79117400-79122600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:79117600-79122600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:79117800-79119600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:79117800-79122400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:79118000-79119600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:79118400-79123800	Enhancers	NHEK	skin
10	chr8:79118600-79119600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:79118600-79120800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:79118600-79124800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:79118800-79123600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:79118800-79124600	Enhancers	HMEC	breast
15	chr8:79119000-79119600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:79119000-79120000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:79119200-79119600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:79119200-79119800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:79119200-79120000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr8:79119200-79121400	Enhancers	HUVEC	blood vessel
21	chr8:79119200-79124800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:79119400-79121400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr8:79119400-79122600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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