Variant report

Variant	rs17484756
Chromosome Location	chr8:79107179-79107180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:79104657..79107348-chr8:79109253..79112104,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13254490	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13254799	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13265230	0.84[EUR][1000 genomes]
rs13266679	0.84[EUR][1000 genomes]
rs13268371	0.90[AFR][1000 genomes]
rs13274740	0.84[EUR][1000 genomes]
rs1820997	0.99[EUR][1000 genomes]
rs2369095	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2369096	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs34064734	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34219583	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34294037	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34447318	0.99[EUR][1000 genomes]
rs34491063	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34678843	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34824032	0.90[AFR][1000 genomes]
rs34963073	0.84[EUR][1000 genomes]
rs35208372	1.00[EUR][1000 genomes]
rs35245347	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35316312	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35334031	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35579758	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs35685676	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs35711420	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs36055647	1.00[EUR][1000 genomes]
rs3736131	0.90[AFR][1000 genomes]
rs4551342	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62510301	0.90[AFR][1000 genomes]
rs62510332	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62510333	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62517358	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6988476	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71500592	0.99[EUR][1000 genomes]
rs71533167	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs71533168	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv982138	chr8:79106680-79116734	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79106600-79109200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links