Variant report

Variant	rs3736131
Chromosome Location	chr8:79066183-79066184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13251222	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251250	1.00[ASN][1000 genomes]
rs13254490	1.00[AFR][1000 genomes]
rs13254799	1.00[AFR][1000 genomes]
rs13266447	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13282579	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484756	0.90[AFR][1000 genomes]
rs2369095	0.96[AFR][1000 genomes]
rs2369096	1.00[AFR][1000 genomes]
rs28421122	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34064734	1.00[AFR][1000 genomes]
rs34219583	1.00[AFR][1000 genomes]
rs34294037	1.00[AFR][1000 genomes]
rs34393478	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34491063	1.00[AFR][1000 genomes]
rs34678843	1.00[AFR][1000 genomes]
rs34789815	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34824032	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35245347	1.00[AFR][1000 genomes]
rs35316312	1.00[AFR][1000 genomes]
rs35334031	1.00[AFR][1000 genomes]
rs35579758	1.00[AFR][1000 genomes]
rs35685676	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35711420	1.00[AFR][1000 genomes]
rs36002580	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36114832	1.00[ASN][1000 genomes]
rs4551342	1.00[AFR][1000 genomes]
rs62510295	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510296	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510332	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62510333	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62517358	1.00[AFR][1000 genomes]
rs6988476	0.93[AFR][1000 genomes]
rs6996222	1.00[ASN][1000 genomes]
rs7003408	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71533167	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs71533168	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3736131	STMN2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79063200-79066400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr8:79063200-79067200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:79063400-79067200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:79063400-79067200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:79063600-79067200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:79064400-79066800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:79065600-79066400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:79065800-79066200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr8:79065800-79066400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links