Variant report

Variant	rs34393478
Chromosome Location	chr8:79030226-79030227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13251222	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251250	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266447	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268371	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13282579	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28421122	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789815	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34824032	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36002580	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36114832	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736131	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510295	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510296	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510301	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996222	1.00[ASN][1000 genomes]
rs7003408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526123	chr8:79008608-79046492	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv525612	chr8:79008608-79046695	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79027800-79031000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:79027800-79032400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:79027800-79032800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:79028000-79030600	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:79028000-79030600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:79028200-79031000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:79029200-79032600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:79030000-79030400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:79030000-79030400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:79030000-79030800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:79030000-79030800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:79030000-79031600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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