Variant report
| Variant | rs7003408 |
|---|---|
| Chromosome Location | chr8:79036108-79036109 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:79030786..79033245-chr8:79035486..79037227,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs13251222 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13251250 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13266447 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13268371 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13282579 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28421122 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34393478 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34789815 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34824032 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36002580 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36114832 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3736131 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62510295 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62510296 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62510301 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6996222 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526123 | chr8:79008608-79046492 | Enhancers Flanking Active TSS Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | nsv525612 | chr8:79008608-79046695 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv831364 | chr8:79034769-79223319 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:79031000-79037000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
