Variant report

Variant	rs6996222
Chromosome Location	chr8:79047096-79047097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13251222	1.00[ASN][1000 genomes]
rs13251250	1.00[ASN][1000 genomes]
rs13266447	1.00[ASN][1000 genomes]
rs13268371	1.00[ASN][1000 genomes]
rs13282579	1.00[ASN][1000 genomes]
rs28421122	1.00[ASN][1000 genomes]
rs34393478	1.00[ASN][1000 genomes]
rs34789815	1.00[ASN][1000 genomes]
rs34824032	1.00[ASN][1000 genomes]
rs36002580	1.00[ASN][1000 genomes]
rs36114832	1.00[ASN][1000 genomes]
rs3736131	1.00[ASN][1000 genomes]
rs62510295	1.00[ASN][1000 genomes]
rs62510296	1.00[ASN][1000 genomes]
rs62510301	1.00[ASN][1000 genomes]
rs7003408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79044800-79047200	Enhancers	Rectal Smooth Muscle	rectum
2	chr8:79045400-79047200	Enhancers	Colon Smooth Muscle	Colon
3	chr8:79046200-79051800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:79046800-79051000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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