Variant report

Variant	rs13265230
Chromosome Location	chr8:79174843-79174844
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13253307	0.85[ASN][1000 genomes]
rs13254490	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13254799	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13266447	1.00[AFR][1000 genomes]
rs13266679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484756	0.84[EUR][1000 genomes]
rs17486452	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1820997	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2369095	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2369096	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34064734	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34219583	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34294037	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34447318	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34491063	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34500915	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34607943	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34678843	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34944617	0.85[ASN][1000 genomes]
rs34963073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35208372	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35245347	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35316312	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35334031	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35579758	0.86[AMR][1000 genomes]
rs35711420	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36002580	1.00[AFR][1000 genomes]
rs36055647	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4551342	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59801513	0.85[ASN][1000 genomes]
rs62510296	1.00[AFR][1000 genomes]
rs62517358	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6988476	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71500592	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891055	chr8:79110386-79256864	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831365	chr8:79128833-79281645	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv6266	chr8:79156823-79202020	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79171800-79176200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:79172000-79176000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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