Variant report

Variant	rs36085609
Chromosome Location	chr2:64206397-64206398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64205616..64208065-chr2:64244741..64246328,2	K562	blood:

Variant related genes	Relation type
ENSG00000143952	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10496104	0.85[AFR][1000 genomes]
rs11896894	0.85[AFR][1000 genomes]
rs11899693	0.83[AFR][1000 genomes]
rs12463827	0.81[ASN][1000 genomes]
rs12466966	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12990604	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13009774	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13014781	0.81[ASN][1000 genomes]
rs13023542	0.81[EUR][1000 genomes]
rs13025640	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17028239	0.84[AFR][1000 genomes]
rs17028316	0.82[AFR][1000 genomes]
rs17028343	0.83[AFR][1000 genomes]
rs34043307	0.81[ASN][1000 genomes]
rs35648996	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35693031	0.86[AFR][1000 genomes]
rs35810427	0.85[ASN][1000 genomes]
rs35972278	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35975566	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4277507	0.84[AFR][1000 genomes]
rs4470330	0.84[AFR][1000 genomes]
rs55977137	0.83[AFR][1000 genomes]
rs56053068	0.83[AFR][1000 genomes]
rs56155077	0.86[AFR][1000 genomes]
rs56674285	0.83[AFR][1000 genomes]
rs56677212	0.80[AFR][1000 genomes]
rs56978264	0.80[AFR][1000 genomes]
rs57085982	0.84[AFR][1000 genomes]
rs57101313	0.80[AFR][1000 genomes]
rs57202709	0.80[AFR][1000 genomes]
rs57936760	0.83[AFR][1000 genomes]
rs58074696	0.84[AFR][1000 genomes]
rs58198691	0.85[AFR][1000 genomes]
rs58297806	0.84[AFR][1000 genomes]
rs58982089	0.83[AFR][1000 genomes]
rs59156176	0.86[AFR][1000 genomes]
rs59335889	0.85[AFR][1000 genomes]
rs59736629	0.83[AFR][1000 genomes]
rs60350159	0.84[AFR][1000 genomes]
rs60847776	0.83[AFR][1000 genomes]
rs61383573	0.82[AFR][1000 genomes]
rs61486417	0.83[AFR][1000 genomes]
rs62136407	0.82[AFR][1000 genomes]
rs62136423	0.83[AFR][1000 genomes]
rs62136429	0.86[AFR][1000 genomes]
rs66476638	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66650505	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66660401	0.81[ASN][1000 genomes]
rs72808248	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72808254	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72808262	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs893779	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1002209	chr2:64160385-64238475	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64114000-64212000	Weak transcription	Small Intestine	intestine
2	chr2:64130400-64211200	Weak transcription	Fetal Brain Male	brain
3	chr2:64139800-64220600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:64154800-64242600	Weak transcription	Aorta	Aorta
5	chr2:64159600-64211600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:64163200-64207600	Weak transcription	HUVEC	blood vessel
7	chr2:64169000-64215000	Weak transcription	Brain Angular Gyrus	brain
8	chr2:64175600-64213000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:64176000-64228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:64177600-64212600	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:64178200-64211400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:64185800-64245000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:64186800-64216200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:64187600-64210200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:64187600-64211400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr2:64187800-64210200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:64187800-64211200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:64188000-64210000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr2:64190000-64212000	Weak transcription	Stomach Mucosa	stomach
20	chr2:64190000-64212800	Weak transcription	Brain Substantia Nigra	brain
21	chr2:64192400-64207600	Strong transcription	HepG2	liver
22	chr2:64194000-64243200	Weak transcription	NHLF	lung
23	chr2:64196400-64212400	Weak transcription	Colonic Mucosa	Colon
24	chr2:64197600-64209200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:64198400-64209800	Weak transcription	Brain Hippocampus Middle	brain
26	chr2:64198400-64210000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:64198400-64211400	Weak transcription	NH-A	brain
28	chr2:64198400-64211800	Weak transcription	HSMMtube	muscle
29	chr2:64198400-64213400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr2:64198600-64212600	Weak transcription	Fetal Heart	heart
31	chr2:64198600-64228000	Weak transcription	Right Ventricle	heart
32	chr2:64198800-64212200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr2:64199000-64212200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr2:64199000-64212800	Weak transcription	Brain Anterior Caudate	brain
35	chr2:64199600-64206400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:64199600-64207400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr2:64199800-64206600	Weak transcription	Primary B cells from cord blood	blood
38	chr2:64199800-64208400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr2:64200000-64208400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr2:64201400-64211600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr2:64201800-64206800	Weak transcription	HSMM	muscle
42	chr2:64201800-64209000	Weak transcription	Hela-S3	cervix
43	chr2:64202200-64206400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:64202200-64206600	Strong transcription	Fetal Stomach	stomach
45	chr2:64202200-64210200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr2:64202800-64208600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr2:64202800-64232400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr2:64203200-64206600	Weak transcription	Placenta	Placenta
49	chr2:64203200-64206800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr2:64203200-64207400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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