Variant report

Variant	rs62136429
Chromosome Location	chr2:64224112-64224113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10496104	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11896894	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11899693	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028239	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17028316	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17028343	0.96[AFR][1000 genomes]
rs17028348	0.91[AFR][1000 genomes]
rs17028356	0.91[AFR][1000 genomes]
rs35693031	0.84[AFR][1000 genomes]
rs36085609	0.86[AFR][1000 genomes]
rs4277507	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4470330	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55977137	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56053068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56674285	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56677212	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56978264	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57085982	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs57101313	0.94[AFR][1000 genomes]
rs57202709	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57252448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57936760	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58074696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58198691	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58297806	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58889204	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58982089	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59156176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59335889	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs59736629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60350159	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60847776	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61383573	0.95[AFR][1000 genomes]
rs61389158	0.90[AFR][1000 genomes]
rs61486417	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136393	0.85[AFR][1000 genomes]
rs62136397	0.86[AFR][1000 genomes]
rs62136398	0.86[AFR][1000 genomes]
rs62136400	0.86[AFR][1000 genomes]
rs62136402	0.86[AFR][1000 genomes]
rs62136407	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62136423	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62136425	0.82[EUR][1000 genomes]
rs62136436	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62136443	1.00[ASN][1000 genomes]
rs62136446	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62136447	0.94[EUR][1000 genomes]
rs62136457	0.94[EUR][1000 genomes]
rs62136458	0.94[EUR][1000 genomes]
rs62136459	0.94[EUR][1000 genomes]
rs73935051	0.93[AFR][1000 genomes]
rs7558570	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1002209	chr2:64160385-64238475	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2763643	chr2:64219887-64281337	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64154800-64242600	Weak transcription	Aorta	Aorta
2	chr2:64176000-64228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:64185800-64245000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:64194000-64243200	Weak transcription	NHLF	lung
5	chr2:64198600-64228000	Weak transcription	Right Ventricle	heart
6	chr2:64202800-64232400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr2:64203200-64228400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:64203400-64228000	Weak transcription	Ovary	ovary
9	chr2:64204200-64227600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:64205600-64228000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:64209000-64229200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr2:64209400-64244800	Weak transcription	HSMM	muscle
13	chr2:64210200-64243000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:64212800-64228400	Weak transcription	NHEK	skin
15	chr2:64213000-64224200	Weak transcription	A549	lung
16	chr2:64213800-64244600	Weak transcription	HUVEC	blood vessel
17	chr2:64217200-64227800	Weak transcription	Left Ventricle	heart
18	chr2:64217800-64224200	Weak transcription	Fetal Lung	lung
19	chr2:64217800-64225400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:64219200-64224200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:64219200-64227800	Weak transcription	Fetal Stomach	stomach
22	chr2:64219200-64237000	Weak transcription	Placenta	Placenta
23	chr2:64219400-64238400	Weak transcription	Gastric	stomach
24	chr2:64221000-64228000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr2:64221400-64228600	Weak transcription	Thymus	Thymus
26	chr2:64221800-64226000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:64222400-64224200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:64222400-64228600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr2:64222400-64230800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:64222400-64242600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:64222400-64243000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:64222600-64228800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:64222800-64224200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:64223000-64224200	Weak transcription	HepG2	liver
35	chr2:64223600-64235600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:64224000-64224600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr2:64224000-64227200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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