Variant report

Variant	rs73935051
Chromosome Location	chr2:64258278-64258279
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:64251335..64255008-chr2:64255786..64259305,3	MCF-7	breast:
2	chr2:64256991..64258692-chr2:64262523..64264445,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10167126	0.93[EUR][1000 genomes]
rs10184342	0.93[EUR][1000 genomes]
rs10207972	0.93[EUR][1000 genomes]
rs10496104	0.91[AFR][1000 genomes]
rs11896894	0.91[AFR][1000 genomes]
rs11899693	0.89[AFR][1000 genomes]
rs13391983	0.93[EUR][1000 genomes]
rs13392513	0.93[EUR][1000 genomes]
rs13412867	0.85[EUR][1000 genomes]
rs1440005	0.80[EUR][1000 genomes]
rs17028239	0.90[AFR][1000 genomes]
rs17028316	0.97[AFR][1000 genomes]
rs17028343	0.94[AFR][1000 genomes]
rs17028348	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17028356	0.94[AFR][1000 genomes]
rs1975295	0.93[EUR][1000 genomes]
rs1975296	0.93[EUR][1000 genomes]
rs2422112	0.93[EUR][1000 genomes]
rs2901644	0.93[EUR][1000 genomes]
rs35121160	0.93[EUR][1000 genomes]
rs35693031	0.91[AFR][1000 genomes]
rs4277507	0.90[AFR][1000 genomes]
rs4470330	0.90[AFR][1000 genomes]
rs4507090	0.93[EUR][1000 genomes]
rs55977137	0.94[AFR][1000 genomes]
rs56053068	0.94[AFR][1000 genomes]
rs56155077	0.93[AFR][1000 genomes]
rs56674285	0.94[AFR][1000 genomes]
rs56677212	0.96[AFR][1000 genomes]
rs56978264	0.86[AFR][1000 genomes]
rs57085982	0.90[AFR][1000 genomes]
rs57101313	0.96[AFR][1000 genomes]
rs57202709	0.96[AFR][1000 genomes]
rs57936760	0.94[AFR][1000 genomes]
rs58074696	0.95[AFR][1000 genomes]
rs58198691	0.91[AFR][1000 genomes]
rs58297806	0.95[AFR][1000 genomes]
rs58889204	0.80[AFR][1000 genomes]
rs58982089	0.94[AFR][1000 genomes]
rs59156176	0.93[AFR][1000 genomes]
rs59335889	0.91[AFR][1000 genomes]
rs59736629	0.94[AFR][1000 genomes]
rs60350159	0.95[AFR][1000 genomes]
rs60847776	0.89[AFR][1000 genomes]
rs61383573	0.97[AFR][1000 genomes]
rs61389158	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61486417	0.94[AFR][1000 genomes]
rs62136407	0.88[AFR][1000 genomes]
rs62136423	0.89[AFR][1000 genomes]
rs62136429	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2763643	chr2:64219887-64281337	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1013132	chr2:64235175-64631084	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv2757803	chr2:64253005-64539556	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	esv2759055	chr2:64253005-64539556	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv428396	chr2:64253005-64539556	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64247600-64262800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr2:64251200-64273200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:64256800-64262200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:64257200-64262400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:64258000-64260200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:64258000-64261800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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