Variant report

Variant	rs36089236
Chromosome Location	chr8:10151348-10151349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10105815	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10903323	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11249981	0.92[ASN][1000 genomes]
rs11249982	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11249983	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11249986	0.86[AMR][1000 genomes]
rs11249987	0.88[AMR][1000 genomes]
rs11249989	0.93[AMR][1000 genomes]
rs11778739	0.91[ASN][1000 genomes]
rs12676847	0.93[AMR][1000 genomes]
rs17151588	0.93[ASN][1000 genomes]
rs17151700	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17151731	0.86[AMR][1000 genomes]
rs17151759	0.92[AMR][1000 genomes]
rs2003226	0.93[AMR][1000 genomes]
rs4240641	0.88[ASN][1000 genomes]
rs4240642	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4278158	0.93[AMR][1000 genomes]
rs4307347	0.92[AMR][1000 genomes]
rs4329276	0.87[AMR][1000 genomes]
rs4403412	0.91[ASN][1000 genomes]
rs4419814	0.92[AMR][1000 genomes]
rs4506212	0.91[ASN][1000 genomes]
rs4546664	0.90[AMR][1000 genomes]
rs4840470	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4840474	0.91[ASN][1000 genomes]
rs4841311	0.94[ASN][1000 genomes]
rs56654851	0.85[ASN][1000 genomes]
rs6601428	0.89[ASN][1000 genomes]
rs7003360	0.94[ASN][1000 genomes]
rs7004254	0.93[ASN][1000 genomes]
rs7006402	0.86[AMR][1000 genomes]
rs723610	0.98[ASN][1000 genomes]
rs764738	0.90[ASN][1000 genomes]
rs7818111	0.92[AMR][1000 genomes]
rs7821327	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10144400-10167000	Weak transcription	Right Ventricle	heart
2	chr8:10148200-10159800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:10149400-10152000	Weak transcription	Fetal Brain Female	brain
4	chr8:10149400-10163400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:10150000-10152200	Weak transcription	Fetal Brain Male	brain
6	chr8:10150600-10151600	Enhancers	Fetal Muscle Trunk	muscle
7	chr8:10150600-10152800	Enhancers	Fetal Muscle Leg	muscle
8	chr8:10150800-10151400	Genic enhancers	Spleen	Spleen
9	chr8:10150800-10152400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr8:10150800-10152800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:10151000-10153000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr8:10151000-10153200	Enhancers	Brain Germinal Matrix	brain
13	chr8:10151000-10160000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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